Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MGOPBDCP_11 | 30907 | 30200 | WalR | 2.28e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MGOPBDCP_25 | 342 | 145 | CspR | 2.00e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MGOPBDCP_25 | 342 | 148 | CspA | 9.74e-29 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MGOPBDCP_20 | 17534 | 18081 | rep38 | 553 / 903 | 83.73 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MGOPBDCP_1 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_2 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_3 | 1.0 | 0.0 | 1.0 |
| MGOPBDCP_4 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_5 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_6 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_7 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_8 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_9 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_10 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_11 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_12 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_13 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_14 | 1.0 | 0.0 | 1.0 |
| MGOPBDCP_15 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_16 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_17 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_18 | 1.0 | 0.0 | 1.0 |
| MGOPBDCP_19 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_20 | 1.0 | 0.0 | 1.0 |
| MGOPBDCP_21 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_22 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_23 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_24 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_25 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_26 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_27 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_28 | 1.0 | 0.0 | 1.0 |
| MGOPBDCP_29 | 0.0 | 1.0 | 0.0 |
| MGOPBDCP_30 | 1.0 | 0.0 | 1.0 |
| MGOPBDCP_31 | 1.0 | 0.0 | 1.0 |
| MGOPBDCP_32 | 1.0 | 0.0 | 1.0 |
| MGOPBDCP_35 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MGOPBDCP_1 | 244903 | 248523 | False | Siphoviridae | VOG4602, VOG8520, VOG8520, VOG6495, VOG0831, VOG8353, VOG5050 |
| MGOPBDCP_4 | 39465 | 61981 | False | Siphoviridae | VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198, VOG7265, VOG4693, VOG7264, VOG4548, VOG5317, VOG5280, VOG7263, VOG0322, VOG0083, VOG1563, VOG1638, VOG1300, VOG8426, VOG3547, VOG11003, VOG8520 |
| MGOPBDCP_14 | 12530 | 32632 | False | Siphoviridae | VOG0198, VOG1315, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG9629, VOG0801, VOG3462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)