Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BODDMGGB_15 | 5362 | 6066 | WalR | 4.52e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BODDMGGB_23 | 46299 | 46105 | CspR | 2.38e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BODDMGGB_23 | 46299 | 46102 | CspA | 3.65e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BODDMGGB_1 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_2 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_3 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_4 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_5 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_6 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_7 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_8 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_9 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_10 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_11 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_12 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_13 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_14 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_15 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_16 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_17 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_18 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_19 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_20 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_21 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_22 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_23 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_24 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_25 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_26 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_27 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_28 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_29 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_30 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_31 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_32 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_33 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_34 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_35 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_36 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_37 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_38 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_39 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_40 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_41 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_42 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_43 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_44 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_45 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_46 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_47 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_48 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_49 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_50 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_51 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_52 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_53 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_54 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_55 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_56 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_57 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_58 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_59 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_60 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_61 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_62 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_63 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_64 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_65 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_66 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_67 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_68 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_69 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_70 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_71 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_72 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_73 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_74 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_75 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_76 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_77 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_78 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_79 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_80 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_81 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_82 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_83 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_84 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_85 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_86 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_87 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_88 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_89 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_90 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_92 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_93 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_94 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_95 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_96 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_97 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_98 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_99 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_100 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_101 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_102 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_104 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_105 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_107 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_108 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_109 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_110 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_111 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_112 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_113 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_114 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_116 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_117 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_118 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_120 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_121 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_122 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_123 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_124 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_125 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_126 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_127 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_128 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_129 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_131 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_132 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_133 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_134 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_135 | 1.0 | 0.0 | 1.0 |
| BODDMGGB_136 | 0.0 | 1.0 | 0.0 |
| BODDMGGB_137 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BODDMGGB_6 | 21547 | 56479 | False | Siphoviridae | VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0686, VOG0198, VOG0586, VOG4693, VOG4552, VOG4566, VOG0186, VOG1309, VOG2703, VOG7298, VOG0181 |
| BODDMGGB_25 | 33175 | 34966 | False | Unknown | VOG5944, VOG2154, VOG5944, VOG2154 |
| BODDMGGB_31 | 6418 | 14512 | False | Siphoviridae | VOG8222, VOG8925, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609 |
| BODDMGGB_31 | 17707 | 38410 | False | Siphoviridae | VOG5253, VOG0376, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917 |
| BODDMGGB_38 | 4103 | 25234 | False | Siphoviridae | VOG4599, VOG4856, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691 |
Phigaro v2.4.0 (Database: Jan. 2024 release)