Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CADGIAKC_4 | 123932 | 124636 | WalR | 2.47e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CADGIAKC_13 | 7701 | 7895 | CspR | 2.38e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CADGIAKC_13 | 7701 | 7898 | CspA | 3.65e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CADGIAKC_1 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_2 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_3 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_4 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_5 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_6 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_7 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_8 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_9 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_10 | 1.0 | 0.0 | 1.0 |
| CADGIAKC_11 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_12 | 1.0 | 0.0 | 1.0 |
| CADGIAKC_13 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_14 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_15 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_16 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_17 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_18 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_19 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_20 | 0.0 | 1.0 | 0.0 |
| CADGIAKC_21 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CADGIAKC_1 | 85135 | 112318 | False | Siphoviridae | VOG4841, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG4615, VOG0753 |
| CADGIAKC_2 | 136986 | 138777 | False | Unknown | VOG2154, VOG5944, VOG2154 |
| CADGIAKC_3 | 286956 | 322252 | False | Siphoviridae | VOG0181, VOG7298, VOG2703, VOG1309, VOG0186, VOG4566, VOG4552, VOG4693, VOG0586, VOG0198, VOG0686, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| CADGIAKC_4 | 111881 | 122440 | False | Siphoviridae | VOG4632, VOG4609, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)