Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PANFDFPO_24 | 18524 | 19228 | WalR | 2.26e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PANFDFPO_4 | 59584 | 59778 | CspR | 6.42e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PANFDFPO_4 | 59584 | 59781 | CspA | 9.84e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PANFDFPO_51 | 4906 | 5808 | rep38 | 903 / 903 | 99.45 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PANFDFPO_1 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_2 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_3 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_4 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_5 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_6 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_7 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_8 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_9 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_10 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_11 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_12 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_13 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_14 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_15 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_16 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_17 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_18 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_19 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_20 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_21 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_22 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_23 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_24 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_25 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_26 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_27 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_28 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_29 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_30 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_31 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_32 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_33 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_34 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_35 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_36 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_37 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_38 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_39 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_40 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_41 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_42 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_43 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_44 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_45 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_46 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_47 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_48 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_49 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_50 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_51 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_52 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_53 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_54 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_55 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_56 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_57 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_58 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_59 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_60 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_61 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_62 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_63 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_64 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_65 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_66 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_67 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_69 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_70 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_71 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_72 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_73 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_74 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_75 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_76 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_77 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_78 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_79 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_80 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_82 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_83 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_84 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_85 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_86 | 0.0 | 1.0 | 0.0 |
| PANFDFPO_87 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_88 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_89 | 1.0 | 0.0 | 1.0 |
| PANFDFPO_90 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PANFDFPO_1 | 210793 | 237252 | False | Siphoviridae | VOG9998, VOG8870, VOG10972, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044 |
| PANFDFPO_3 | 40669 | 47945 | False | Siphoviridae | VOG6495, VOG6495, VOG3549, VOG0650, VOG3049, VOG0535, VOG0322, VOG6545, VOG0514, VOG4566 |
| PANFDFPO_3 | 51631 | 74458 | False | Siphoviridae | VOG5616, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4619, VOG4856, VOG9640, VOG0804, VOG7896, VOG5361 |
| PANFDFPO_5 | 28006 | 37851 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
| PANFDFPO_25 | 6291 | 38203 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG6970, VOG3643, VOG4673, VOG1637, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917 |
Phigaro v2.4.0 (Database: Jan. 2024 release)