Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FNDHAAAN_24 | 22675 | 21971 | WalR | 2.26e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| FNDHAAAN_5 | 59584 | 59778 | CspR | 6.42e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| FNDHAAAN_5 | 59584 | 59781 | CspA | 9.84e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FNDHAAAN_58 | 736 | 1671 | rep28 | 936 / 936 | 100.00 | CP005948 |
| FNDHAAAN_49 | 4906 | 5808 | rep38 | 903 / 903 | 99.45 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FNDHAAAN_1 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_2 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_3 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_4 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_5 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_6 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_7 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_8 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_9 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_10 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_11 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_12 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_13 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_14 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_15 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_16 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_17 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_18 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_19 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_20 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_21 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_22 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_23 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_24 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_25 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_26 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_27 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_28 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_29 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_30 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_31 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_32 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_33 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_34 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_35 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_36 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_37 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_38 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_39 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_40 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_41 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_42 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_43 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_44 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_45 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_46 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_47 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_48 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_49 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_50 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_51 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_52 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_53 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_54 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_55 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_56 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_57 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_58 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_60 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_61 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_62 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_63 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_64 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_65 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_66 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_67 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_69 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_70 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_71 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_72 | 0.0 | 1.0 | 0.0 |
| FNDHAAAN_73 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_74 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_75 | 1.0 | 0.0 | 1.0 |
| FNDHAAAN_76 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FNDHAAAN_1 | 210793 | 237252 | False | Siphoviridae | VOG9998, VOG8870, VOG10972, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044 |
| FNDHAAAN_2 | 189690 | 212517 | False | Siphoviridae | VOG5361, VOG7896, VOG0804, VOG9640, VOG4856, VOG4619, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG3699, VOG5616 |
| FNDHAAAN_2 | 216718 | 222764 | False | Siphoviridae | VOG4566, VOG0514, VOG6545, VOG0322, VOG0535, VOG3049, VOG0650, VOG3549 |
| FNDHAAAN_2 | 265175 | 297371 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG1637, VOG4673, VOG3643, VOG6970, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
| FNDHAAAN_6 | 95171 | 105016 | False | Siphoviridae | VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)