Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IIJJDOPK_23 | 22675 | 21971 | WalR | 2.26e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IIJJDOPK_5 | 85837 | 85643 | CspR | 6.41e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IIJJDOPK_5 | 85837 | 85640 | CspA | 9.83e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IIJJDOPK_62 | 2359 | 3294 | rep28 | 936 / 936 | 100.00 | CP005948 |
| IIJJDOPK_50 | 2694 | 3596 | rep38 | 903 / 903 | 99.45 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IIJJDOPK_1 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_2 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_3 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_4 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_5 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_6 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_7 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_8 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_9 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_10 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_11 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_12 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_13 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_14 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_15 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_16 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_17 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_18 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_19 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_20 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_21 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_22 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_23 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_24 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_25 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_26 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_27 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_28 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_29 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_30 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_31 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_32 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_33 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_34 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_35 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_36 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_37 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_38 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_39 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_40 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_41 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_42 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_43 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_44 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_45 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_46 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_47 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_48 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_49 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_50 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_51 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_52 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_53 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_54 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_55 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_56 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_57 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_58 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_59 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_60 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_61 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_62 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_63 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_64 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_65 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_66 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_68 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_69 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_70 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_71 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_72 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_73 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_74 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_75 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_76 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_78 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_79 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_80 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_81 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_82 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_83 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_84 | 0.0 | 1.0 | 0.0 |
| IIJJDOPK_85 | 1.0 | 0.0 | 1.0 |
| IIJJDOPK_86 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IIJJDOPK_1 | 151335 | 177794 | False | Siphoviridae | VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10972, VOG8870 |
| IIJJDOPK_3 | 30102 | 62298 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG6970, VOG3643, VOG4673, VOG1637, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG1637 |
| IIJJDOPK_3 | 104709 | 110755 | False | Siphoviridae | VOG3549, VOG0650, VOG3049, VOG0535, VOG0322, VOG6545, VOG0514, VOG4566 |
| IIJJDOPK_3 | 114956 | 137783 | False | Siphoviridae | VOG5616, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4619, VOG4856, VOG9640, VOG0804, VOG7896, VOG5361 |
| IIJJDOPK_6 | 27793 | 37638 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
Phigaro v2.4.0 (Database: Jan. 2024 release)