Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNPJFKNC_12 | 72321 | 71617 | WalR | 6.54e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JNPJFKNC_5 | 86308 | 86114 | CspR | 9.08e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JNPJFKNC_5 | 86308 | 86111 | CspA | 1.39e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JNPJFKNC_25 | 2754 | 3320 | rep38 | 572 / 903 | 89.34 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNPJFKNC_1 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_2 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_3 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_4 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_5 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_6 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_7 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_8 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_9 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_10 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_11 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_12 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_13 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_14 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_15 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_16 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_17 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_18 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_19 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_20 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_21 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_22 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_23 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_24 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_25 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_26 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_27 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_28 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_29 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_30 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_31 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_32 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_33 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_34 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_35 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_36 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_37 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_38 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_39 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_40 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_41 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_42 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_43 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_44 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_45 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_46 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_47 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_48 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_49 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_50 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_51 | 0.0 | 1.0 | 0.0 |
| JNPJFKNC_52 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_53 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_54 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_55 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_57 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_58 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_59 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_60 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_62 | 1.0 | 0.0 | 1.0 |
| JNPJFKNC_63 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNPJFKNC_1 | 149939 | 177293 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0045 |
| JNPJFKNC_1 | 185461 | 202722 | False | Siphoviridae | VOG4602, VOG10613, VOG8491, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| JNPJFKNC_4 | 183844 | 207333 | False | Siphoviridae | VOG8438, VOG1637, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG1315 |
| JNPJFKNC_26 | 6857 | 21390 | False | Siphoviridae | VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553 |
Phigaro v2.4.0 (Database: Jan. 2024 release)