Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HICPPONB_17 | 263992 | 263288 | WalR | 3.10e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HICPPONB_1 | 120374 | 120571 | CspR | 1.81e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HICPPONB_1 | 0.0 | 1.0 | 0.0 |
| HICPPONB_2 | 0.0 | 1.0 | 0.0 |
| HICPPONB_3 | 0.0 | 1.0 | 0.0 |
| HICPPONB_4 | 0.0 | 1.0 | 0.0 |
| HICPPONB_5 | 0.0 | 1.0 | 0.0 |
| HICPPONB_6 | 0.0 | 1.0 | 0.0 |
| HICPPONB_7 | 0.0 | 1.0 | 0.0 |
| HICPPONB_8 | 0.0 | 1.0 | 0.0 |
| HICPPONB_9 | 0.0 | 1.0 | 0.0 |
| HICPPONB_10 | 0.0 | 1.0 | 0.0 |
| HICPPONB_11 | 0.0 | 1.0 | 0.0 |
| HICPPONB_12 | 1.0 | 0.0 | 1.0 |
| HICPPONB_13 | 1.0 | 0.0 | 1.0 |
| HICPPONB_17 | 0.0 | 1.0 | 0.0 |
| HICPPONB_18 | 0.0 | 1.0 | 0.0 |
| HICPPONB_19 | 0.0 | 1.0 | 0.0 |
| HICPPONB_20 | 0.0 | 1.0 | 0.0 |
| HICPPONB_21 | 0.0 | 1.0 | 0.0 |
| HICPPONB_22 | 0.0 | 1.0 | 0.0 |
| HICPPONB_23 | 0.0 | 1.0 | 0.0 |
| HICPPONB_24 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HICPPONB_1 | 31730 | 41326 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| HICPPONB_18 | 329818 | 339936 | True | Siphoviridae | VOG4799, VOG0189, VOG0982, VOG5280, VOG5317, VOG3307, VOG0198, VOG5088, VOG5088, VOG4570, VOG4549 |
| HICPPONB_24 | 41649 | 117408 | False | Siphoviridae | VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG6429, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG4673, VOG0744, VOG4693, VOG5562, VOG5998, VOG4900, VOG0189, VOG4566, VOG11003, VOG1309, VOG4600, VOG10867, VOG4552, VOG5353, VOG6495, VOG4602, VOG7420, VOG0275, VOG8653, VOG0866, VOG4918, VOG0054, VOG7888, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10303, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG10904, VOG4570, VOG4403, VOG1315, VOG0198, VOG3307, VOG0044, VOG2820, VOG4643, VOG0275, VOG0195, VOG0536, VOG9860, VOG4566, VOG0226, VOG0322, VOG0321, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG4995, VOG2215, VOG6914 |
Phigaro v2.4.0 (Database: Jan. 2024 release)