Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGPLMPOG_22 | 64806 | 68366 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.40 | 100.00 | NC_008618.1 |
| GGPLMPOG_2 | 52983 | 54902 | tet(O) | ARO:3000190 | tet(O) | 93.43 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GGPLMPOG_2 | 52983 | 54902 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.43 | 100.00 | AIOQ01000025 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGPLMPOG_2 | 52986 | 54902 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 93.74 | 100.00 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGPLMPOG_1 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_2 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_3 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_4 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_5 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_6 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_7 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_8 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_9 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_10 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_11 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_13 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_18 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_19 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_20 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_21 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_22 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_23 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_24 | 0.0 | 1.0 | 0.0 |
| GGPLMPOG_25 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGPLMPOG_4 | 32837 | 42994 | False | Siphoviridae | VOG4841, VOG2948, VOG1574, VOG5101, VOG0720, VOG2806, VOG2651, VOG3434, VOG1887, VOG1581 |
| GGPLMPOG_19 | 88727 | 105441 | False | Siphoviridae | VOG8699, VOG2624, VOG9762, VOG4621, VOG1159, VOG1158, VOG1210, VOG4553, VOG4568, VOG4556, VOG4556, VOG4544, VOG0296, VOG2038 |
Phigaro v2.4.0 (Database: Jan. 2024 release)