Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMGBCHIO_31 | 13 | 3696 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 103.46 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMGBCHIO_1 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_2 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_3 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_4 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_5 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_6 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_7 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_8 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_9 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_10 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_11 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_12 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_13 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_14 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_15 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_17 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_18 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_19 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_20 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_21 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_22 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_23 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_24 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_25 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_26 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_27 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_28 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_29 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_30 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_31 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_32 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_33 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_34 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_35 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_36 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_37 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_38 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_39 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_40 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_41 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_42 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_43 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_44 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_45 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_46 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_47 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_48 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_49 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_50 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_51 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_52 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_53 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_54 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_55 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_56 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_57 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_58 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_59 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_60 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_61 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_62 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_63 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_64 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_65 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_66 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_67 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_68 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_69 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_70 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_71 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_72 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_73 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_75 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_76 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_77 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_78 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_79 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_80 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_81 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_82 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_83 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_84 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_85 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_86 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_87 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_88 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_89 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_90 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_91 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_92 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_93 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_94 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_95 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_96 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_98 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_99 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_100 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_101 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_103 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_104 | 1.0 | 0.0 | 1.0 |
| LMGBCHIO_110 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_111 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_116 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_117 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_118 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_119 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_120 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_121 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_122 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_123 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_124 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_125 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_126 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_127 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_128 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_129 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_130 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_131 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_132 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_133 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_134 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_135 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_136 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_137 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_138 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_139 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_140 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_141 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_142 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_143 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_144 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_145 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_146 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_147 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_148 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_149 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_150 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_151 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_152 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_153 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_154 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_155 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_156 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_157 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_158 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_159 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_160 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_161 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_162 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_163 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_164 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_165 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_166 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_167 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_168 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_169 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_170 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_171 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_172 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_173 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_174 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_175 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_176 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_177 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_178 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_179 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_180 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_181 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_182 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_183 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_184 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_185 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_186 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_187 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_188 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_189 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_190 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_191 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_192 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_193 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_194 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_195 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_196 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_197 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_198 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_199 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_200 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_201 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_202 | 0.0 | 1.0 | 0.0 |
| LMGBCHIO_203 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMGBCHIO_110 | 11369 | 23130 | False | Siphoviridae | VOG0692, VOG2538, VOG0686, VOG2038, VOG3028, VOG4544, VOG0720, VOG4576, VOG11022, VOG4555, VOG4553, VOG1581, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)