Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LFDHENOI_131 | 112825 | 112121 | WalR | 1.44e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LFDHENOI_11 | 13929 | 14126 | CspR | 1.55e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFDHENOI_11 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_22 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_33 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_44 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_54 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_65 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_76 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_84 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_85 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_86 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_87 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_88 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_89 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_90 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_91 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_92 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_93 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_94 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_95 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_96 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_97 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_98 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_99 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_100 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_101 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_102 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_103 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_104 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_105 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_106 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_107 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_108 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_109 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_110 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_111 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_113 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_114 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_115 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_116 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_117 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_118 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_119 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_120 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_121 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_122 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_123 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_124 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_125 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_126 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_127 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_128 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_129 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_130 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_131 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_132 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_133 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_134 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_135 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_136 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_137 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_138 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_139 | 1.0 | 0.0 | 1.0 |
| LFDHENOI_142 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_153 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_164 | 0.0 | 1.0 | 0.0 |
| LFDHENOI_175 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFDHENOI_87 | 54904 | 63977 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
Phigaro v2.4.0 (Database: Jan. 2024 release)