Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BENEMHLD_9 | 53317 | 54021 | WalR | 1.63e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| BENEMHLD_4 | 43281 | 43478 | CspR | 1.08e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BENEMHLD_1 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_2 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_3 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_4 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_5 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_6 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_7 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_8 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_9 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_10 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_11 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_12 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_13 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_14 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_15 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_16 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_17 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_18 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_19 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_20 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_21 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_22 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_23 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_24 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_25 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_26 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_27 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_28 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_29 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_30 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_31 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_32 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_33 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_34 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_35 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_36 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_37 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_38 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_39 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_40 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_41 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_42 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_43 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_44 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_45 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_46 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_47 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_49 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_50 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_51 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_52 | 1.0 | 0.0 | 1.0 |
| BENEMHLD_54 | 0.0 | 1.0 | 0.0 |
| BENEMHLD_55 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BENEMHLD_1 | 2780 | 25184 | False | Siphoviridae | VOG1886, VOG0202, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495 |
| BENEMHLD_4 | 65854 | 99443 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9667, VOG9860, VOG6623, VOG4693, VOG9741, VOG9759, VOG2820, VOG6131, VOG3643, VOG3643, VOG0198, VOG4570, VOG10904, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0054, VOG4918 |
| BENEMHLD_11 | 63085 | 75719 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG4609, VOG4632, VOG1581 |
Phigaro v2.4.0 (Database: Jan. 2024 release)