Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GIDMICAI_4 | 33127 | 32423 | WalR | 3.71e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GIDMICAI_10 | 49717 | 49914 | CspR | 8.15e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GIDMICAI_21 | 410 | 908 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIDMICAI_1 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_2 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_3 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_4 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_5 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_6 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_7 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_8 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_9 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_10 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_11 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_12 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_13 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_14 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_15 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_16 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_17 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_18 | 1.0 | 0.0 | 1.0 |
| GIDMICAI_19 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_21 | 1.0 | 0.0 | 1.0 |
| GIDMICAI_23 | 0.0 | 1.0 | 0.0 |
| GIDMICAI_24 | 1.0 | 0.0 | 1.0 |
| GIDMICAI_25 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIDMICAI_1 | 355499 | 380512 | False | Siphoviridae | VOG0195, VOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG4553, VOG0205, VOG0207, VOG4586, VOG0209, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG7896, VOG0753, VOG0703, VOG8294, VOG0376, VOG6495 |
| GIDMICAI_4 | 103413 | 113838 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| GIDMICAI_5 | 2737 | 43225 | False | Siphoviridae | VOG1561, VOG9667, VOG3622, VOG4552, VOG4552, VOG0181, VOG10867, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG9741, VOG4567, VOG0195, VOG0275, VOG4643, VOG2820, VOG0634, VOG3643, VOG6815, VOG0198, VOG7136, VOG4570, VOG4549, VOG1345, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)