Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NCEMGJGO_1 | 114891 | 114187 | WalR | 1.88e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NCEMGJGO_3 | 13979 | 14176 | CspR | 2.41e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NCEMGJGO_48 | 1468 | 2526 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCEMGJGO_1 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_2 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_3 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_4 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_5 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_6 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_7 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_8 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_9 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_10 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_11 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_12 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_13 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_14 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_15 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_16 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_17 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_18 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_19 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_20 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_21 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_22 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_23 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_24 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_25 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_26 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_27 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_28 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_29 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_30 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_31 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_32 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_33 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_34 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_35 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_36 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_37 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_38 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_39 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_40 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_41 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_42 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_43 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_44 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_45 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_46 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_47 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_48 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_49 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_50 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_51 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_52 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_53 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_54 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_55 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_56 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_57 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_59 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_60 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_61 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_62 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_63 | 0.0 | 1.0 | 0.0 |
| NCEMGJGO_64 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_66 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_67 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_68 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_69 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_70 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_71 | 1.0 | 0.0 | 1.0 |
| NCEMGJGO_72 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NCEMGJGO_2 | 176917 | 183465 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
| NCEMGJGO_3 | 33678 | 43747 | False | Unknown | VOG9667, VOG6495, VOG1333, VOG4965, VOG6179, VOG11003, VOG11003, VOG6495, VOG7236, VOG8241, VOG1309, VOG0186, VOG4566, VOG0189 |
| NCEMGJGO_3 | 45320 | 71782 | False | Siphoviridae | VOG3307, VOG0198, VOG4570, VOG3699, VOG4544, VOG0720, VOG4564, VOG5616, VOG1300, VOG4555, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG4705, VOG1637, VOG0703, VOG4918, VOG4605 |
Phigaro v2.4.0 (Database: Jan. 2024 release)