Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MHLCKPCD_1 | 117857 | 118561 | WalR | 1.06e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MHLCKPCD_3 | 85857 | 85663 | CspR | 5.00e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MHLCKPCD_3 | 85857 | 85660 | CspA | 7.66e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MHLCKPCD_69 | 2747 | 3682 | rep28 | 936 / 936 | 99.89 | CP005948 |
| MHLCKPCD_59 | 14431 | 15321 | rep38 | 902 / 903 | 96.23 | CP005943 |
| MHLCKPCD_98 | 2957 | 3879 | repUS73 | 938 / 1101 | 80.06 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MHLCKPCD_1 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_2 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_3 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_4 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_5 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_6 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_7 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_8 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_9 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_10 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_11 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_12 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_13 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_14 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_15 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_16 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_17 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_18 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_19 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_20 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_21 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_22 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_23 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_24 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_25 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_26 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_27 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_28 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_29 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_30 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_31 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_32 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_33 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_34 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_35 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_36 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_37 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_38 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_39 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_40 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_41 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_42 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_43 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_44 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_45 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_46 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_47 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_48 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_49 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_50 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_51 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_52 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_53 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_54 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_55 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_56 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_57 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_58 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_59 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_60 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_61 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_62 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_63 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_64 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_65 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_66 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_67 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_68 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_69 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_70 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_71 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_72 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_73 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_74 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_75 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_76 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_77 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_78 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_79 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_80 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_81 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_82 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_83 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_84 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_85 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_86 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_87 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_88 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_89 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_90 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_91 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_92 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_93 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_94 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_95 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_96 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_98 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_99 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_100 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_101 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_102 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_103 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_104 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_105 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_106 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_107 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_108 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_109 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_110 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_111 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_112 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_113 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_114 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_115 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_116 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_117 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_118 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_119 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_120 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_121 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_122 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_123 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_124 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_125 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_126 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_127 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_128 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_129 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_130 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_131 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_133 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_134 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_135 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_136 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_137 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_138 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_139 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_140 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_141 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_142 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_143 | 0.0 | 1.0 | 0.0 |
| MHLCKPCD_144 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_145 | 1.0 | 0.0 | 1.0 |
| MHLCKPCD_146 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MHLCKPCD_2 | 23596 | 50044 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG0531, VOG0198, VOG0044, VOG1298 |
| MHLCKPCD_7 | 3510 | 31319 | False | Siphoviridae | VOG1298, VOG3507, VOG0044, VOG3643, VOG0198, VOG0045, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG1637, VOG8438, VOG0870, VOG0804, VOG4705, VOG8294 |
| MHLCKPCD_16 | 34651 | 57848 | False | Siphoviridae | VOG3443, VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| MHLCKPCD_40 | 4672 | 27877 | False | Siphoviridae | VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
Phigaro v2.4.0 (Database: Jan. 2024 release)