Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GPEDPPEK_1 | 73586 | 72882 | WalR | 1.06e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GPEDPPEK_3 | 27397 | 27591 | CspR | 5.00e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GPEDPPEK_3 | 27397 | 27594 | CspA | 7.66e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GPEDPPEK_68 | 2745 | 3680 | rep28 | 936 / 936 | 99.89 | CP005948 |
| GPEDPPEK_58 | 2576 | 3466 | rep38 | 902 / 903 | 96.23 | CP005943 |
| GPEDPPEK_98 | 2957 | 3879 | repUS73 | 938 / 1101 | 80.06 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPEDPPEK_1 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_2 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_3 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_4 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_5 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_6 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_7 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_8 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_9 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_10 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_11 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_12 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_13 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_14 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_15 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_16 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_17 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_18 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_19 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_20 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_21 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_22 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_23 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_24 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_25 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_26 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_27 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_28 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_29 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_30 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_31 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_32 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_33 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_34 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_35 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_36 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_37 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_38 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_39 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_40 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_41 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_42 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_43 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_44 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_45 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_46 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_47 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_48 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_49 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_50 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_51 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_52 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_53 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_54 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_55 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_56 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_57 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_58 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_59 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_60 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_61 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_62 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_63 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_64 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_65 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_66 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_67 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_68 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_69 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_70 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_71 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_72 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_73 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_74 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_75 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_76 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_77 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_78 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_79 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_80 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_81 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_82 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_83 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_84 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_85 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_86 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_87 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_88 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_89 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_90 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_91 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_92 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_93 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_94 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_95 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_96 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_98 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_99 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_100 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_101 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_102 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_103 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_104 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_105 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_106 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_107 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_108 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_109 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_110 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_111 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_112 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_113 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_114 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_115 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_116 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_117 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_118 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_119 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_120 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_121 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_122 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_123 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_124 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_125 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_126 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_127 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_128 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_129 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_131 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_132 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_133 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_134 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_135 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_136 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_137 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_138 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_139 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_140 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_141 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_142 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_143 | 0.0 | 1.0 | 0.0 |
| GPEDPPEK_144 | 1.0 | 0.0 | 1.0 |
| GPEDPPEK_145 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPEDPPEK_2 | 64122 | 90570 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG0531, VOG0198, VOG0044, VOG1298 |
| GPEDPPEK_7 | 47839 | 75648 | False | Siphoviridae | VOG0753, VOG8294, VOG4705, VOG0804, VOG0870, VOG8438, VOG1637, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0045, VOG0198, VOG3643, VOG0044, VOG3507, VOG1298 |
| GPEDPPEK_15 | 3397 | 26594 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG1191 |
| GPEDPPEK_40 | 4672 | 27877 | False | Siphoviridae | VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
Phigaro v2.4.0 (Database: Jan. 2024 release)