Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDLMBCOA_1 | 117857 | 118561 | WalR | 1.06e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HDLMBCOA_3 | 27397 | 27591 | CspR | 5.00e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HDLMBCOA_3 | 27397 | 27594 | CspA | 7.66e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HDLMBCOA_69 | 11556 | 12491 | rep28 | 936 / 936 | 99.89 | CP005948 |
| HDLMBCOA_59 | 14431 | 15321 | rep38 | 902 / 903 | 96.23 | CP005943 |
| HDLMBCOA_99 | 1164 | 2086 | repUS73 | 938 / 1101 | 80.06 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDLMBCOA_1 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_2 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_3 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_4 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_5 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_6 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_7 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_8 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_9 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_10 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_11 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_12 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_13 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_14 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_15 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_16 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_17 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_18 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_19 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_20 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_21 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_22 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_23 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_24 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_25 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_26 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_27 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_28 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_29 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_30 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_31 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_32 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_33 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_34 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_35 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_36 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_37 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_38 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_39 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_40 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_41 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_42 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_43 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_44 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_45 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_46 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_47 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_48 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_49 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_50 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_51 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_52 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_53 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_54 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_55 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_56 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_57 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_58 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_59 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_60 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_61 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_62 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_63 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_64 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_65 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_66 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_67 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_68 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_69 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_70 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_71 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_72 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_73 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_74 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_75 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_76 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_77 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_78 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_79 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_80 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_81 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_82 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_83 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_84 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_85 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_86 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_87 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_88 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_89 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_90 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_91 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_92 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_93 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_94 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_95 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_96 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_97 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_99 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_100 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_101 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_102 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_103 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_104 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_105 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_106 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_107 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_108 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_109 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_110 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_111 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_112 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_113 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_114 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_115 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_116 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_117 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_118 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_119 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_120 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_121 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_122 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_123 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_124 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_125 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_126 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_127 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_128 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_130 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_131 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_132 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_133 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_134 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_135 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_136 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_137 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_138 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_139 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_140 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_141 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_142 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_143 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_144 | 0.0 | 1.0 | 0.0 |
| HDLMBCOA_145 | 1.0 | 0.0 | 1.0 |
| HDLMBCOA_146 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDLMBCOA_2 | 74396 | 100844 | False | Siphoviridae | VOG1298, VOG0044, VOG0198, VOG0531, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957 |
| HDLMBCOA_7 | 4566 | 31527 | False | Siphoviridae | VOG0044, VOG3643, VOG0198, VOG0045, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG1637, VOG8438, VOG0870, VOG0804, VOG4705, VOG8294 |
| HDLMBCOA_16 | 34653 | 57850 | False | Siphoviridae | VOG3443, VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| HDLMBCOA_40 | 3181 | 26386 | False | Siphoviridae | VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564 |
Phigaro v2.4.0 (Database: Jan. 2024 release)