Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPHPDNCN_1 | 117857 | 118561 | WalR | 1.06e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PPHPDNCN_3 | 27397 | 27591 | CspR | 5.00e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PPHPDNCN_3 | 27397 | 27594 | CspA | 7.66e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PPHPDNCN_66 | 2747 | 3682 | rep28 | 936 / 936 | 99.89 | CP005948 |
| PPHPDNCN_58 | 14431 | 15321 | rep38 | 902 / 903 | 96.23 | CP005943 |
| PPHPDNCN_95 | 1164 | 2086 | repUS73 | 938 / 1101 | 80.06 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPHPDNCN_1 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_2 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_3 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_4 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_5 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_6 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_7 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_8 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_9 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_10 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_11 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_12 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_13 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_14 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_15 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_16 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_17 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_18 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_19 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_20 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_21 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_22 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_23 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_24 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_25 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_26 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_27 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_28 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_29 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_30 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_31 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_32 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_33 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_34 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_35 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_36 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_37 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_38 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_39 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_40 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_41 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_42 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_43 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_44 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_45 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_46 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_47 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_48 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_49 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_50 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_51 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_52 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_53 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_54 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_55 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_56 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_57 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_58 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_59 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_60 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_61 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_62 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_63 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_64 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_65 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_66 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_67 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_68 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_69 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_70 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_71 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_72 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_73 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_74 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_75 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_76 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_77 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_78 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_79 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_80 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_81 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_82 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_83 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_84 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_85 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_86 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_87 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_88 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_89 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_90 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_91 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_92 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_93 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_95 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_96 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_97 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_98 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_99 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_100 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_101 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_102 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_103 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_104 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_105 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_106 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_107 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_108 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_109 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_110 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_111 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_112 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_113 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_114 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_115 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_116 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_117 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_118 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_119 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_120 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_121 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_122 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_124 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_125 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_126 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_127 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_128 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_129 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_130 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_131 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_132 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_133 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_134 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_135 | 0.0 | 1.0 | 0.0 |
| PPHPDNCN_136 | 1.0 | 0.0 | 1.0 |
| PPHPDNCN_137 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPHPDNCN_2 | 74396 | 100844 | False | Siphoviridae | VOG1298, VOG0044, VOG0198, VOG0531, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957 |
| PPHPDNCN_7 | 4566 | 31527 | False | Siphoviridae | VOG0044, VOG3643, VOG0198, VOG0045, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG1637, VOG8438, VOG0870, VOG0804, VOG4705, VOG8294 |
| PPHPDNCN_16 | 34653 | 57850 | False | Siphoviridae | VOG3443, VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| PPHPDNCN_40 | 4672 | 27877 | False | Siphoviridae | VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
Phigaro v2.4.0 (Database: Jan. 2024 release)