Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMIOFDPP_13 | 4330 | 5034 | WalR | 4.35e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PMIOFDPP_6 | 54494 | 54688 | CspR | 6.27e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PMIOFDPP_6 | 54494 | 54691 | CspA | 9.61e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PMIOFDPP_91 | 1 | 871 | rep28 | 871 / 936 | 100.00 | CP005948 |
| PMIOFDPP_77 | 2496 | 3451 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMIOFDPP_1 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_2 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_3 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_4 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_5 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_6 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_7 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_8 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_9 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_10 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_11 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_12 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_13 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_14 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_15 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_16 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_17 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_18 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_19 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_20 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_21 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_22 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_23 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_24 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_25 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_26 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_27 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_28 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_29 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_30 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_31 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_32 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_33 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_34 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_35 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_36 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_37 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_38 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_39 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_40 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_41 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_42 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_43 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_44 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_45 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_46 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_47 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_48 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_49 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_50 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_51 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_52 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_53 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_54 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_55 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_56 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_57 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_58 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_59 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_60 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_61 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_62 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_63 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_64 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_65 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_66 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_67 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_68 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_70 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_71 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_72 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_73 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_74 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_75 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_76 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_77 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_78 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_79 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_80 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_81 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_82 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_83 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_84 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_85 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_86 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_87 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_88 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_89 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_90 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_91 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_92 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_93 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_94 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_95 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_96 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_97 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_98 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_99 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_100 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_101 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_102 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_103 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_104 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_105 | 0.0 | 1.0 | 0.0 |
| PMIOFDPP_106 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_107 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_108 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_109 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_110 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_111 | 1.0 | 0.0 | 1.0 |
| PMIOFDPP_112 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMIOFDPP_3 | 145139 | 167414 | False | Siphoviridae | VOG9888, VOG8917, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
Phigaro v2.4.0 (Database: Jan. 2024 release)