Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NBFPAOJM_3 | 84729 | 85433 | WalR | 6.40e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NBFPAOJM_37 | 1632 | 1826 | CspR | 1.44e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NBFPAOJM_37 | 1632 | 1829 | CspA | 2.21e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NBFPAOJM_133 | 1 | 928 | rep28 | 928 / 936 | 100.00 | CP005948 |
| NBFPAOJM_96 | 384 | 1274 | rep38 | 902 / 903 | 96.23 | CP005943 |
| NBFPAOJM_112 | 1 | 956 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NBFPAOJM_1 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_2 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_3 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_4 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_5 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_6 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_7 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_8 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_9 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_10 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_11 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_12 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_13 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_14 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_15 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_16 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_17 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_18 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_19 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_20 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_21 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_22 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_23 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_24 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_25 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_26 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_27 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_28 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_29 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_30 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_31 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_32 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_33 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_34 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_35 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_36 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_37 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_38 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_39 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_40 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_41 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_42 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_43 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_44 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_45 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_46 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_47 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_48 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_49 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_50 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_51 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_52 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_53 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_54 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_55 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_56 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_57 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_58 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_59 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_60 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_61 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_62 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_63 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_64 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_65 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_66 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_67 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_68 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_69 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_70 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_71 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_72 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_73 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_74 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_75 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_76 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_77 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_78 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_79 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_80 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_81 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_82 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_83 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_84 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_85 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_86 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_87 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_88 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_89 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_90 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_91 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_92 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_93 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_94 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_95 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_96 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_97 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_98 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_99 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_100 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_101 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_102 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_103 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_104 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_105 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_106 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_107 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_108 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_109 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_110 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_111 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_112 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_113 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_114 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_115 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_116 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_117 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_118 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_119 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_120 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_121 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_122 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_123 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_124 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_125 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_126 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_127 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_128 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_129 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_131 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_132 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_133 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_135 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_136 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_137 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_139 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_140 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_141 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_142 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_143 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_144 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_145 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_146 | 1.0 | 0.0 | 1.0 |
| NBFPAOJM_147 | 0.0 | 1.0 | 0.0 |
| NBFPAOJM_148 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NBFPAOJM_10 | 6177 | 17468 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| NBFPAOJM_21 | 631 | 28231 | False | Siphoviridae | VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG8612, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0045, VOG5709, VOG0198, VOG0044, VOG3507, VOG4693, VOG0189, VOG3008, VOG0186, VOG1309, VOG0650, VOG3549 |
| NBFPAOJM_28 | 12327 | 38157 | False | Siphoviridae | VOG0136, VOG1837, VOG5008, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG8349, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG0686, VOG5709, VOG0198, VOG1298 |
| NBFPAOJM_48 | 4660 | 18405 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605 |
Phigaro v2.4.0 (Database: Jan. 2024 release)