Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPGAOIOK_3 | 82492 | 83196 | WalR | 6.28e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CPGAOIOK_34 | 1757 | 1951 | CspR | 1.45e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CPGAOIOK_34 | 1757 | 1954 | CspA | 2.22e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CPGAOIOK_156 | 120 | 1055 | rep28 | 936 / 936 | 100.00 | CP005948 |
| CPGAOIOK_102 | 5239 | 6129 | rep38 | 902 / 903 | 96.23 | CP005943 |
| CPGAOIOK_124 | 2245 | 3200 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPGAOIOK_1 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_2 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_3 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_4 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_5 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_6 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_7 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_8 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_9 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_10 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_11 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_12 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_13 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_14 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_15 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_16 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_17 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_18 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_19 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_20 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_21 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_22 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_23 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_24 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_25 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_26 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_27 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_28 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_29 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_30 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_31 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_32 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_33 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_34 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_35 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_36 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_37 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_38 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_39 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_40 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_41 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_42 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_43 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_44 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_45 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_46 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_47 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_48 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_49 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_50 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_51 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_52 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_53 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_54 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_55 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_56 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_57 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_58 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_59 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_60 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_61 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_62 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_63 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_64 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_65 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_66 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_67 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_68 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_69 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_70 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_71 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_72 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_73 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_74 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_75 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_76 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_77 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_78 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_79 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_80 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_81 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_82 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_83 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_84 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_85 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_86 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_87 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_88 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_89 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_90 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_91 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_92 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_93 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_94 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_95 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_96 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_97 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_98 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_99 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_100 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_101 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_102 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_103 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_104 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_105 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_106 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_107 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_108 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_109 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_110 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_111 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_112 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_113 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_114 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_115 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_116 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_117 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_118 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_119 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_120 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_121 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_122 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_123 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_124 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_125 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_126 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_127 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_128 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_129 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_130 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_131 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_132 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_133 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_135 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_136 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_137 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_138 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_139 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_140 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_141 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_142 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_143 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_144 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_145 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_146 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_147 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_148 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_149 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_150 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_151 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_152 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_153 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_155 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_156 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_157 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_158 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_159 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_160 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_161 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_162 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_163 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_164 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_165 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_166 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_167 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_168 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_169 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_170 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_171 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_172 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_173 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_174 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_175 | 0.0 | 1.0 | 0.0 |
| CPGAOIOK_176 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_177 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_178 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_179 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_180 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_181 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_182 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_183 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_184 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_185 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_186 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_187 | 1.0 | 0.0 | 1.0 |
| CPGAOIOK_188 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPGAOIOK_9 | 51151 | 62442 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204 |
| CPGAOIOK_29 | 25595 | 31896 | False | Unknown | VOG3549, VOG0650, VOG1309, VOG0186, VOG3008, VOG0189 |
| CPGAOIOK_47 | 1971 | 16224 | False | Siphoviridae | VOG5631, VOG4605, VOG4599, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)