Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HKLMKOJD_3 | 84982 | 85686 | WalR | 6.42e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HKLMKOJD_35 | 1757 | 1951 | CspR | 1.45e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HKLMKOJD_35 | 1757 | 1954 | CspA | 2.22e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HKLMKOJD_151 | 120 | 1055 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HKLMKOJD_103 | 5239 | 6129 | rep38 | 902 / 903 | 96.23 | CP005943 |
| HKLMKOJD_122 | 2079 | 3034 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HKLMKOJD_1 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_2 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_3 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_4 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_5 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_6 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_7 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_8 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_9 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_10 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_11 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_12 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_13 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_14 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_15 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_16 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_17 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_18 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_19 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_20 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_21 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_22 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_23 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_24 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_25 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_26 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_27 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_28 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_29 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_30 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_31 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_32 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_33 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_34 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_35 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_36 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_37 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_38 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_39 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_40 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_41 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_42 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_43 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_44 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_45 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_46 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_47 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_48 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_49 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_50 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_51 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_52 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_53 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_54 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_55 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_56 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_57 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_58 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_59 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_60 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_61 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_62 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_63 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_64 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_65 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_66 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_67 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_68 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_69 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_70 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_71 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_72 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_73 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_74 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_75 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_76 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_77 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_78 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_79 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_80 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_81 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_82 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_83 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_84 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_85 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_86 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_87 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_88 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_89 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_90 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_91 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_92 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_93 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_94 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_95 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_96 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_97 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_98 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_99 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_100 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_101 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_102 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_103 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_104 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_105 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_106 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_107 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_108 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_109 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_110 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_111 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_112 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_113 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_114 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_115 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_116 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_117 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_118 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_119 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_120 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_121 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_122 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_123 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_124 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_125 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_126 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_127 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_128 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_129 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_130 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_131 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_133 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_134 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_135 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_136 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_137 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_138 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_139 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_140 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_141 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_142 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_143 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_144 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_145 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_146 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_147 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_148 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_149 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_151 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_152 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_153 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_154 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_155 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_156 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_157 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_158 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_159 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_160 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_161 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_162 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_163 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_164 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_165 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_166 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_167 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_168 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_169 | 0.0 | 1.0 | 0.0 |
| HKLMKOJD_170 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_171 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_172 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_173 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_174 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_175 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_176 | 1.0 | 0.0 | 1.0 |
| HKLMKOJD_177 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HKLMKOJD_9 | 6460 | 17751 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| HKLMKOJD_29 | 5050 | 11893 | False | Unknown | VOG3507, VOG4693, VOG0189, VOG3008, VOG0186, VOG1309, VOG0650, VOG3549 |
| HKLMKOJD_47 | 1971 | 16224 | False | Siphoviridae | VOG5631, VOG4605, VOG4599, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)