Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NBMHONNK_1 | 132961 | 132257 | WalR | 1.06e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NBMHONNK_39 | 333 | 527 | CspR | 1.18e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NBMHONNK_39 | 333 | 530 | CspA | 1.81e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NBMHONNK_83 | 1061 | 1996 | rep28 | 936 / 936 | 100.00 | CP005948 |
| NBMHONNK_34 | 29050 | 29621 | rep38 | 577 / 903 | 88.21 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NBMHONNK_1 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_2 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_3 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_4 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_5 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_6 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_7 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_8 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_9 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_10 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_11 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_12 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_13 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_14 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_15 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_16 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_17 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_18 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_19 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_20 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_21 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_22 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_23 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_24 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_25 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_26 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_27 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_28 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_29 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_30 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_31 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_32 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_33 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_34 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_35 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_36 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_37 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_38 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_39 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_40 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_41 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_42 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_43 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_44 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_45 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_46 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_47 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_48 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_49 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_50 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_51 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_52 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_53 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_54 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_55 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_56 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_57 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_58 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_59 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_60 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_61 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_62 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_63 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_64 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_65 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_66 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_67 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_68 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_69 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_70 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_71 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_72 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_73 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_75 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_76 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_77 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_78 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_79 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_80 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_81 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_82 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_83 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_84 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_85 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_86 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_87 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_88 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_89 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_90 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_91 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_92 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_93 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_94 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_95 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_96 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_97 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_98 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_99 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_100 | 0.0 | 1.0 | 0.0 |
| NBMHONNK_101 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_102 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_103 | 1.0 | 0.0 | 1.0 |
| NBMHONNK_104 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NBMHONNK_3 | 147867 | 150040 | False | Siphoviridae | VOG3480, VOG10015, VOG0044 |
| NBMHONNK_13 | 1649 | 21807 | False | Siphoviridae | VOG4556, VOG4573, VOG7853, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998 |
| NBMHONNK_16 | 4078 | 10772 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
| NBMHONNK_23 | 6492 | 8821 | False | Siphoviridae | VOG4602, VOG4687 |
Phigaro v2.4.0 (Database: Jan. 2024 release)