Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COJIECFE_1 | 132961 | 132257 | WalR | 1.06e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| COJIECFE_39 | 26374 | 26180 | CspR | 1.18e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| COJIECFE_39 | 26374 | 26177 | CspA | 1.81e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| COJIECFE_88 | 753 | 1688 | rep28 | 936 / 936 | 100.00 | CP005948 |
| COJIECFE_36 | 830 | 1401 | rep38 | 577 / 903 | 88.21 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COJIECFE_1 | 0.0 | 1.0 | 0.0 |
| COJIECFE_2 | 0.0 | 1.0 | 0.0 |
| COJIECFE_3 | 0.0 | 1.0 | 0.0 |
| COJIECFE_4 | 0.0 | 1.0 | 0.0 |
| COJIECFE_5 | 0.0 | 1.0 | 0.0 |
| COJIECFE_6 | 0.0 | 1.0 | 0.0 |
| COJIECFE_7 | 0.0 | 1.0 | 0.0 |
| COJIECFE_8 | 0.0 | 1.0 | 0.0 |
| COJIECFE_9 | 0.0 | 1.0 | 0.0 |
| COJIECFE_10 | 0.0 | 1.0 | 0.0 |
| COJIECFE_11 | 0.0 | 1.0 | 0.0 |
| COJIECFE_12 | 0.0 | 1.0 | 0.0 |
| COJIECFE_13 | 0.0 | 1.0 | 0.0 |
| COJIECFE_14 | 0.0 | 1.0 | 0.0 |
| COJIECFE_15 | 0.0 | 1.0 | 0.0 |
| COJIECFE_16 | 0.0 | 1.0 | 0.0 |
| COJIECFE_17 | 0.0 | 1.0 | 0.0 |
| COJIECFE_18 | 0.0 | 1.0 | 0.0 |
| COJIECFE_19 | 0.0 | 1.0 | 0.0 |
| COJIECFE_20 | 0.0 | 1.0 | 0.0 |
| COJIECFE_21 | 0.0 | 1.0 | 0.0 |
| COJIECFE_22 | 0.0 | 1.0 | 0.0 |
| COJIECFE_23 | 0.0 | 1.0 | 0.0 |
| COJIECFE_24 | 0.0 | 1.0 | 0.0 |
| COJIECFE_25 | 0.0 | 1.0 | 0.0 |
| COJIECFE_26 | 0.0 | 1.0 | 0.0 |
| COJIECFE_27 | 0.0 | 1.0 | 0.0 |
| COJIECFE_28 | 0.0 | 1.0 | 0.0 |
| COJIECFE_29 | 0.0 | 1.0 | 0.0 |
| COJIECFE_30 | 0.0 | 1.0 | 0.0 |
| COJIECFE_31 | 0.0 | 1.0 | 0.0 |
| COJIECFE_32 | 0.0 | 1.0 | 0.0 |
| COJIECFE_33 | 0.0 | 1.0 | 0.0 |
| COJIECFE_34 | 0.0 | 1.0 | 0.0 |
| COJIECFE_35 | 0.0 | 1.0 | 0.0 |
| COJIECFE_36 | 1.0 | 0.0 | 1.0 |
| COJIECFE_37 | 0.0 | 1.0 | 0.0 |
| COJIECFE_38 | 0.0 | 1.0 | 0.0 |
| COJIECFE_39 | 0.0 | 1.0 | 0.0 |
| COJIECFE_40 | 0.0 | 1.0 | 0.0 |
| COJIECFE_41 | 0.0 | 1.0 | 0.0 |
| COJIECFE_42 | 0.0 | 1.0 | 0.0 |
| COJIECFE_43 | 0.0 | 1.0 | 0.0 |
| COJIECFE_44 | 0.0 | 1.0 | 0.0 |
| COJIECFE_45 | 0.0 | 1.0 | 0.0 |
| COJIECFE_46 | 0.0 | 1.0 | 0.0 |
| COJIECFE_47 | 0.0 | 1.0 | 0.0 |
| COJIECFE_48 | 0.0 | 1.0 | 0.0 |
| COJIECFE_49 | 0.0 | 1.0 | 0.0 |
| COJIECFE_50 | 0.0 | 1.0 | 0.0 |
| COJIECFE_51 | 1.0 | 0.0 | 1.0 |
| COJIECFE_52 | 0.0 | 1.0 | 0.0 |
| COJIECFE_53 | 0.0 | 1.0 | 0.0 |
| COJIECFE_54 | 1.0 | 0.0 | 1.0 |
| COJIECFE_55 | 1.0 | 0.0 | 1.0 |
| COJIECFE_56 | 0.0 | 1.0 | 0.0 |
| COJIECFE_57 | 0.0 | 1.0 | 0.0 |
| COJIECFE_58 | 0.0 | 1.0 | 0.0 |
| COJIECFE_59 | 0.0 | 1.0 | 0.0 |
| COJIECFE_60 | 1.0 | 0.0 | 1.0 |
| COJIECFE_61 | 1.0 | 0.0 | 1.0 |
| COJIECFE_62 | 1.0 | 0.0 | 1.0 |
| COJIECFE_63 | 1.0 | 0.0 | 1.0 |
| COJIECFE_64 | 0.0 | 1.0 | 0.0 |
| COJIECFE_65 | 1.0 | 0.0 | 1.0 |
| COJIECFE_66 | 1.0 | 0.0 | 1.0 |
| COJIECFE_67 | 1.0 | 0.0 | 1.0 |
| COJIECFE_68 | 0.0 | 1.0 | 0.0 |
| COJIECFE_69 | 1.0 | 0.0 | 1.0 |
| COJIECFE_70 | 0.0 | 1.0 | 0.0 |
| COJIECFE_71 | 0.0 | 1.0 | 0.0 |
| COJIECFE_72 | 0.0 | 1.0 | 0.0 |
| COJIECFE_73 | 1.0 | 0.0 | 1.0 |
| COJIECFE_74 | 1.0 | 0.0 | 1.0 |
| COJIECFE_75 | 1.0 | 0.0 | 1.0 |
| COJIECFE_76 | 0.0 | 1.0 | 0.0 |
| COJIECFE_78 | 0.0 | 1.0 | 0.0 |
| COJIECFE_79 | 0.0 | 1.0 | 0.0 |
| COJIECFE_80 | 1.0 | 0.0 | 1.0 |
| COJIECFE_81 | 1.0 | 0.0 | 1.0 |
| COJIECFE_82 | 0.0 | 1.0 | 0.0 |
| COJIECFE_83 | 1.0 | 0.0 | 1.0 |
| COJIECFE_84 | 1.0 | 0.0 | 1.0 |
| COJIECFE_85 | 1.0 | 0.0 | 1.0 |
| COJIECFE_86 | 0.0 | 1.0 | 0.0 |
| COJIECFE_87 | 0.0 | 1.0 | 0.0 |
| COJIECFE_88 | 1.0 | 0.0 | 1.0 |
| COJIECFE_89 | 1.0 | 0.0 | 1.0 |
| COJIECFE_91 | 1.0 | 0.0 | 1.0 |
| COJIECFE_92 | 1.0 | 0.0 | 1.0 |
| COJIECFE_93 | 1.0 | 0.0 | 1.0 |
| COJIECFE_94 | 1.0 | 0.0 | 1.0 |
| COJIECFE_95 | 1.0 | 0.0 | 1.0 |
| COJIECFE_96 | 1.0 | 0.0 | 1.0 |
| COJIECFE_97 | 1.0 | 0.0 | 1.0 |
| COJIECFE_98 | 0.0 | 1.0 | 0.0 |
| COJIECFE_99 | 1.0 | 0.0 | 1.0 |
| COJIECFE_100 | 1.0 | 0.0 | 1.0 |
| COJIECFE_101 | 0.0 | 1.0 | 0.0 |
| COJIECFE_102 | 1.0 | 0.0 | 1.0 |
| COJIECFE_103 | 1.0 | 0.0 | 1.0 |
| COJIECFE_104 | 0.0 | 1.0 | 0.0 |
| COJIECFE_105 | 1.0 | 0.0 | 1.0 |
| COJIECFE_106 | 0.0 | 1.0 | 0.0 |
| COJIECFE_107 | 1.0 | 0.0 | 1.0 |
| COJIECFE_108 | 1.0 | 0.0 | 1.0 |
| COJIECFE_109 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| COJIECFE_3 | 147867 | 150040 | False | Siphoviridae | VOG3480, VOG10015, VOG0044 |
| COJIECFE_13 | 1649 | 21807 | False | Siphoviridae | VOG4556, VOG4573, VOG7853, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998 |
| COJIECFE_16 | 2489 | 9183 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
| COJIECFE_23 | 40324 | 42653 | False | Unknown | VOG7508, VOG4687 |
Phigaro v2.4.0 (Database: Jan. 2024 release)