Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJAKMADH_1 | 326696 | 327400 | WalR | 2.04e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CJAKMADH_7 | 44408 | 44602 | CspR | 7.17e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CJAKMADH_7 | 44408 | 44605 | CspA | 1.10e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CJAKMADH_42 | 5355 | 6284 | rep28 | 930 / 930 | 98.82 | CP003162 |
| CJAKMADH_21 | 34048 | 35148 | repUS73 | 1101 / 1101 | 95.91 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJAKMADH_1 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_2 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_3 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_4 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_5 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_6 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_7 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_8 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_9 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_10 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_11 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_12 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_13 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_14 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_15 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_16 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_17 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_18 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_19 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_20 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_21 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_22 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_23 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_24 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_25 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_26 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_27 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_28 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_29 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_30 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_31 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_32 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_33 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_34 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_35 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_36 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_37 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_38 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_39 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_40 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_41 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_42 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_43 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_44 | 0.0 | 1.0 | 0.0 |
| CJAKMADH_45 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_46 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_47 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_49 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_50 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_51 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_52 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_53 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_54 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_55 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_56 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_57 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_59 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_60 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_61 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_62 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_63 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_64 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_65 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_66 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_67 | 1.0 | 0.0 | 1.0 |
| CJAKMADH_68 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CJAKMADH_1 | 314922 | 325776 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| CJAKMADH_2 | 269847 | 285493 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660 |
| CJAKMADH_10 | 94043 | 119603 | False | Siphoviridae | VOG8294, VOG4783, VOG7896, VOG0804, VOG9640, VOG4856, VOG4619, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG9322, VOG7443, VOG0198 |
| CJAKMADH_11 | 1475 | 15230 | False | Siphoviridae | VOG4586, VOG0209, VOG5904, VOG4605, VOG4599, VOG10957 |
| CJAKMADH_16 | 3182 | 9801 | False | Siphoviridae | VOG3643, VOG0044, VOG4693, VOG0189, VOG4566, VOG0514, VOG0322, VOG0535 |
Phigaro v2.4.0 (Database: Jan. 2024 release)