Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LHNHCJJK_1 | 302680 | 303384 | WalR | 2.41e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LHNHCJJK_13 | 333 | 527 | CspR | 3.93e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LHNHCJJK_13 | 333 | 530 | CspA | 6.02e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LHNHCJJK_47 | 4671 | 5508 | rep38 | 839 / 903 | 98.81 | CP005943 |
| LHNHCJJK_29 | 8452 | 9549 | repUS73 | 1098 / 1101 | 94.81 | CP002654 |
| LHNHCJJK_31 | 7276 | 8210 | rep28 | 941 / 930 | 83.00 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHNHCJJK_1 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_2 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_3 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_4 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_5 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_6 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_7 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_8 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_9 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_10 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_11 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_12 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_13 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_14 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_15 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_16 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_17 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_18 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_19 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_20 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_21 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_22 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_23 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_24 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_25 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_26 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_27 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_28 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_29 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_30 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_31 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_32 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_33 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_34 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_35 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_36 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_37 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_38 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_39 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_40 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_41 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_42 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_43 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_44 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_45 | 0.0 | 1.0 | 0.0 |
| LHNHCJJK_46 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_47 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_48 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_49 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_50 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_51 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_52 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_53 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_54 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_55 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_56 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_57 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_58 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_59 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_61 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_62 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_63 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_64 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_65 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_66 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_67 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_68 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_69 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_70 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_71 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_72 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_74 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_75 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_76 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_77 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_78 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_79 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_80 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_81 | 1.0 | 0.0 | 1.0 |
| LHNHCJJK_82 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LHNHCJJK_2 | 2117 | 23926 | False | Siphoviridae | VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917, VOG9888, VOG0602, VOG8294 |
| LHNHCJJK_3 | 148557 | 176588 | False | Siphoviridae | VOG3480, VOG10015, VOG0044, VOG3643, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998, VOG4615 |
| LHNHCJJK_7 | 50069 | 71347 | False | Siphoviridae | VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG8357, VOG0701, VOG6163, VOG0801, VOG4619, VOG4626, VOG4334 |
| LHNHCJJK_12 | 79366 | 86945 | False | Siphoviridae | VOG0181, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)