Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KOCNBHMD_1 | 133131 | 132427 | WalR | 2.41e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KOCNBHMD_13 | 88666 | 88472 | CspR | 3.93e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KOCNBHMD_13 | 88666 | 88469 | CspA | 6.02e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KOCNBHMD_47 | 1 | 838 | rep38 | 839 / 903 | 98.81 | CP005943 |
| KOCNBHMD_30 | 8452 | 9549 | repUS73 | 1098 / 1101 | 94.81 | CP002654 |
| KOCNBHMD_29 | 7171 | 8105 | rep28 | 941 / 930 | 83.00 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KOCNBHMD_1 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_2 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_3 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_4 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_5 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_6 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_7 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_8 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_9 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_10 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_11 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_12 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_13 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_14 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_15 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_16 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_17 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_18 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_19 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_20 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_21 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_22 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_23 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_24 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_25 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_26 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_27 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_28 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_29 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_30 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_31 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_32 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_33 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_34 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_35 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_36 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_37 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_38 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_39 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_40 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_41 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_42 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_43 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_44 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_45 | 0.0 | 1.0 | 0.0 |
| KOCNBHMD_46 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_47 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_48 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_49 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_50 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_51 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_52 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_53 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_54 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_55 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_56 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_57 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_59 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_60 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_61 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_62 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_63 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_64 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_65 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_66 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_67 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_68 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_69 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_71 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_72 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_73 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_74 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_75 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_76 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_77 | 1.0 | 0.0 | 1.0 |
| KOCNBHMD_78 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KOCNBHMD_2 | 2117 | 23926 | False | Siphoviridae | VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917, VOG9888, VOG0602, VOG8294 |
| KOCNBHMD_3 | 117449 | 145480 | False | Siphoviridae | VOG0753, VOG4615, VOG9998, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG4010, VOG3643, VOG0044, VOG10015 |
| KOCNBHMD_7 | 96888 | 118166 | False | Siphoviridae | VOG7896, VOG4334, VOG4626, VOG4619, VOG0801, VOG6163, VOG0701, VOG8357, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG3699 |
| KOCNBHMD_12 | 79366 | 86945 | False | Siphoviridae | VOG0181, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)