Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FILCKKCH_2 | 49212 | 49916 | WalR | 1.01e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| FILCKKCH_8 | 23260 | 23454 | CspR | 4.89e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| FILCKKCH_8 | 23260 | 23457 | CspA | 7.50e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FILCKKCH_55 | 2972 | 3907 | rep28 | 936 / 936 | 100.00 | CP005948 |
| FILCKKCH_31 | 7249 | 8283 | rep38 | 1044 / 1104 | 81.42 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FILCKKCH_1 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_2 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_3 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_4 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_5 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_6 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_7 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_8 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_9 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_10 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_11 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_12 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_13 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_14 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_15 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_16 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_17 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_18 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_19 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_20 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_21 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_22 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_23 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_24 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_25 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_26 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_27 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_28 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_29 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_30 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_31 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_32 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_33 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_34 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_35 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_36 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_37 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_38 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_39 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_40 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_41 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_42 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_43 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_44 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_45 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_46 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_47 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_48 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_49 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_50 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_51 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_52 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_53 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_54 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_55 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_56 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_57 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_58 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_59 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_60 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_61 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_62 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_63 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_64 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_65 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_66 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_67 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_68 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_69 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_70 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_71 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_73 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_74 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_75 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_76 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_77 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_78 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_79 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_80 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_81 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_82 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_83 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_84 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_85 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_86 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_87 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_88 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_89 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_90 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_91 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_92 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_93 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_94 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_95 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_96 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_97 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_98 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_99 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_100 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_101 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_102 | 0.0 | 1.0 | 0.0 |
| FILCKKCH_103 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_104 | 1.0 | 0.0 | 1.0 |
| FILCKKCH_105 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FILCKKCH_3 | 113151 | 139262 | False | Siphoviridae | VOG4918, VOG9998, VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841 |
| FILCKKCH_5 | 11576 | 35805 | False | Siphoviridae | VOG8294, VOG0136, VOG4660, VOG4619, VOG0801, VOG6163, VOG0701, VOG8357, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG3699 |
| FILCKKCH_7 | 9763 | 32001 | False | Siphoviridae | VOG8294, VOG0602, VOG9888, VOG8917, VOG3498, VOG4619, VOG0801, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| FILCKKCH_7 | 39585 | 47400 | False | Siphoviridae | VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG0181, VOG8222 |
Phigaro v2.4.0 (Database: Jan. 2024 release)