Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JKMPBAGG_2 | 49212 | 49916 | WalR | 1.01e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JKMPBAGG_8 | 23260 | 23454 | CspR | 4.89e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JKMPBAGG_8 | 23260 | 23457 | CspA | 7.50e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JKMPBAGG_54 | 2972 | 3907 | rep28 | 936 / 936 | 100.00 | CP005948 |
| JKMPBAGG_31 | 28983 | 30017 | rep38 | 1044 / 1104 | 81.42 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JKMPBAGG_1 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_2 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_3 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_4 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_5 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_6 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_7 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_8 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_9 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_10 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_11 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_12 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_13 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_14 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_15 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_16 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_17 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_18 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_19 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_20 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_21 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_22 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_23 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_24 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_25 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_26 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_27 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_28 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_29 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_30 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_31 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_32 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_33 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_34 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_35 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_36 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_37 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_38 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_39 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_40 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_41 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_42 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_43 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_44 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_45 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_46 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_47 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_48 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_49 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_50 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_51 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_52 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_53 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_54 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_55 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_56 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_57 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_58 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_59 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_60 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_61 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_62 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_63 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_64 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_65 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_66 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_67 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_68 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_69 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_70 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_72 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_73 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_74 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_75 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_76 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_77 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_78 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_79 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_80 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_81 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_82 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_83 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_84 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_85 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_86 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_87 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_88 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_89 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_90 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_91 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_92 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_93 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_94 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_95 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_96 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_97 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_98 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_99 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_100 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_101 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_102 | 0.0 | 1.0 | 0.0 |
| JKMPBAGG_103 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_104 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_105 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_106 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_107 | 1.0 | 0.0 | 1.0 |
| JKMPBAGG_108 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JKMPBAGG_3 | 2790 | 28901 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG9998 |
| JKMPBAGG_5 | 11576 | 35805 | False | Siphoviridae | VOG8294, VOG0136, VOG4660, VOG4619, VOG0801, VOG6163, VOG0701, VOG8357, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG3699 |
| JKMPBAGG_7 | 75576 | 83391 | False | Siphoviridae | VOG4552, VOG8222, VOG0181, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632 |
| JKMPBAGG_7 | 90975 | 113213 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG0801, VOG4619, VOG3498, VOG8917, VOG9888, VOG0602, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)