Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CEOIOPMM_2 | 132983 | 132279 | WalR | 1.01e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CEOIOPMM_8 | 87538 | 87344 | CspR | 4.89e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CEOIOPMM_8 | 87538 | 87341 | CspA | 7.50e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CEOIOPMM_54 | 2972 | 3907 | rep28 | 936 / 936 | 100.00 | CP005948 |
| CEOIOPMM_31 | 28983 | 30017 | rep38 | 1044 / 1104 | 81.42 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEOIOPMM_1 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_2 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_3 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_4 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_5 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_6 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_7 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_8 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_9 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_10 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_11 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_12 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_13 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_14 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_15 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_16 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_17 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_18 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_19 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_20 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_21 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_22 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_23 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_24 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_25 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_26 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_27 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_28 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_29 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_30 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_31 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_32 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_33 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_34 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_35 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_36 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_37 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_38 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_39 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_40 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_41 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_42 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_43 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_44 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_45 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_46 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_47 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_48 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_49 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_50 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_51 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_52 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_53 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_54 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_55 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_56 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_57 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_58 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_59 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_60 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_61 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_62 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_63 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_64 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_65 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_66 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_67 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_68 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_69 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_70 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_72 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_73 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_74 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_75 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_76 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_77 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_78 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_79 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_80 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_81 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_82 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_83 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_84 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_85 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_86 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_87 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_88 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_89 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_90 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_91 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_92 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_93 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_94 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_95 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_96 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_97 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_98 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_99 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_100 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_101 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_102 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_103 | 0.0 | 1.0 | 0.0 |
| CEOIOPMM_104 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_105 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_106 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_107 | 1.0 | 0.0 | 1.0 |
| CEOIOPMM_108 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CEOIOPMM_3 | 2790 | 28901 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG9998 |
| CEOIOPMM_5 | 11576 | 35805 | False | Siphoviridae | VOG8294, VOG0136, VOG4660, VOG4619, VOG0801, VOG6163, VOG0701, VOG8357, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG3699 |
| CEOIOPMM_7 | 9763 | 32001 | False | Siphoviridae | VOG8294, VOG0602, VOG9888, VOG8917, VOG3498, VOG4619, VOG0801, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| CEOIOPMM_7 | 39585 | 47400 | False | Siphoviridae | VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG0181, VOG8222 |
Phigaro v2.4.0 (Database: Jan. 2024 release)