Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKBNBDAG_41 | 10979 | 10275 | WalR | 1.08e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LKBNBDAG_2 | 55201 | 55395 | CspR | 8.82e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LKBNBDAG_2 | 55201 | 55398 | CspA | 1.35e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LKBNBDAG_52 | 3262 | 4197 | rep28 | 937 / 936 | 81.22 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKBNBDAG_1 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_2 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_3 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_4 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_5 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_6 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_7 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_8 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_9 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_10 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_11 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_12 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_13 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_14 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_15 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_16 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_17 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_18 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_19 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_20 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_21 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_22 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_23 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_24 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_25 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_26 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_27 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_28 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_29 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_30 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_31 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_32 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_33 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_34 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_35 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_36 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_37 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_38 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_39 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_40 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_41 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_42 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_43 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_44 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_45 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_46 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_47 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_48 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_49 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_50 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_51 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_52 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_53 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_54 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_55 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_56 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_58 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_59 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_60 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_61 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_62 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_63 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_64 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_65 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_66 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_67 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_68 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_69 | 0.0 | 1.0 | 0.0 |
| LKBNBDAG_70 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_71 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_72 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_73 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_74 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_75 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_76 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_77 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_78 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_79 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_80 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_81 | 1.0 | 0.0 | 1.0 |
| LKBNBDAG_82 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKBNBDAG_4 | 142999 | 163718 | False | Siphoviridae | VOG10917, VOG4552, VOG4552, VOG3711, VOG0650, VOG5073, VOG0685, VOG0283, VOG0226, VOG0514, VOG0514, VOG3624, VOG5532, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG4599, VOG10957, VOG8870 |
| LKBNBDAG_10 | 37905 | 47707 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204 |
| LKBNBDAG_10 | 59542 | 92527 | False | Siphoviridae | VOG1309, VOG0186, VOG5046, VOG0189, VOG4552, VOG4693, VOG0044, VOG0198, VOG0045, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294 |
| LKBNBDAG_16 | 61745 | 81849 | False | Siphoviridae | VOG4615, VOG10016, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553 |
| LKBNBDAG_18 | 19951 | 40522 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| LKBNBDAG_18 | 45094 | 51837 | False | Siphoviridae | VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8925 |
Phigaro v2.4.0 (Database: Jan. 2024 release)