Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OJFMBOMI_3 | 345159 | 345863 | WalR | 2.22e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OJFMBOMI_6 | 73038 | 73232 | CspR | 1.08e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OJFMBOMI_6 | 73038 | 73235 | CspA | 1.66e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OJFMBOMI_1 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_2 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_3 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_4 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_5 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_6 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_7 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_8 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_9 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_10 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_11 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_12 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_13 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_14 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_15 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_16 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_17 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_18 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_19 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_20 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_21 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_22 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_23 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_24 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_25 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_26 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_27 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_28 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_29 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_30 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_32 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_33 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_34 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_35 | 0.0 | 1.0 | 0.0 |
| OJFMBOMI_36 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_37 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_38 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_39 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_40 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_41 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_42 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_43 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_44 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_45 | 1.0 | 0.0 | 1.0 |
| OJFMBOMI_46 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OJFMBOMI_4 | 150399 | 186964 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0045, VOG0198, VOG4693, VOG2591, VOG4855, VOG0186, VOG1309, VOG7298, VOG0181, VOG9655, VOG6495, VOG11003, VOG11077 |
| OJFMBOMI_6 | 215401 | 219135 | False | Unknown | VOG8520, VOG8520, VOG4552, VOG0650 |
| OJFMBOMI_6 | 224587 | 244147 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG5051, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605 |
| OJFMBOMI_11 | 68698 | 71750 | False | Unknown | VOG1309, VOG0186 |
| OJFMBOMI_11 | 78209 | 99058 | False | Siphoviridae | VOG1183, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG1637, VOG4334 |
| OJFMBOMI_15 | 4172 | 22643 | False | Siphoviridae | VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)