Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MKJMMCAF_9 | 91839 | 92543 | WalR | 6.57e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MKJMMCAF_6 | 54496 | 54690 | CspR | 6.27e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MKJMMCAF_6 | 54496 | 54693 | CspA | 9.61e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MKJMMCAF_46 | 5293 | 6183 | rep38 | 902 / 903 | 96.12 | CP005943 |
| MKJMMCAF_30 | 28774 | 29874 | repUS73 | 1101 / 1101 | 92.10 | CP002654 |
| MKJMMCAF_100 | 753 | 1366 | rep28 | 615 / 936 | 83.74 | CP005948 |
| MKJMMCAF_65 | 1065 | 2020 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MKJMMCAF_1 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_2 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_3 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_4 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_5 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_6 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_7 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_8 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_9 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_10 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_11 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_12 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_13 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_14 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_15 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_16 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_17 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_18 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_19 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_20 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_21 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_22 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_23 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_24 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_25 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_26 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_27 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_28 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_29 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_30 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_31 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_32 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_33 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_34 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_35 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_36 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_37 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_38 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_39 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_40 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_41 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_42 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_43 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_44 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_45 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_46 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_47 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_48 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_49 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_50 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_51 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_52 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_53 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_54 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_55 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_56 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_57 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_58 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_59 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_60 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_61 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_62 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_63 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_64 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_65 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_66 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_67 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_68 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_69 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_70 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_71 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_72 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_74 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_75 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_76 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_77 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_78 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_79 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_80 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_81 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_82 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_83 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_84 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_85 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_86 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_87 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_88 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_89 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_90 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_91 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_92 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_93 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_94 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_95 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_96 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_97 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_98 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_99 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_100 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_101 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_102 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_103 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_104 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_105 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_106 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_107 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_108 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_109 | 0.0 | 1.0 | 0.0 |
| MKJMMCAF_110 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_111 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_112 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_113 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_114 | 1.0 | 0.0 | 1.0 |
| MKJMMCAF_115 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MKJMMCAF_3 | 145241 | 168739 | False | Siphoviridae | VOG9888, VOG8917, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154, VOG4673, VOG3643 |
| MKJMMCAF_4 | 120469 | 144269 | False | Siphoviridae | VOG9998, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| MKJMMCAF_11 | 29709 | 45262 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG4994 |
| MKJMMCAF_11 | 58655 | 86065 | False | Siphoviridae | VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)