Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCEGDDLG_7 | 9026 | 9730 | WalR | 1.19e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LCEGDDLG_4 | 109248 | 109442 | CspR | 1.21e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LCEGDDLG_4 | 109248 | 109445 | CspA | 1.86e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCEGDDLG_1 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_2 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_3 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_4 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_5 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_6 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_7 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_8 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_9 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_10 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_11 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_12 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_13 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_14 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_15 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_16 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_17 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_18 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_19 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_20 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_21 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_22 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_23 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_24 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_25 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_26 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_27 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_28 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_29 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_30 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_32 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_33 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_34 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_35 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_36 | 0.0 | 1.0 | 0.0 |
| LCEGDDLG_37 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_38 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_39 | 1.0 | 0.0 | 1.0 |
| LCEGDDLG_40 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCEGDDLG_1 | 246873 | 280313 | False | Siphoviridae | VOG4552, VOG4693, VOG0198, VOG3015, VOG1844, VOG0686, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054 |
| LCEGDDLG_3 | 31533 | 39020 | False | Siphoviridae | VOG6495, VOG0321, VOG4548, VOG6394, VOG0322, VOG6545, VOG4632, VOG4609 |
| LCEGDDLG_3 | 42304 | 64327 | False | Siphoviridae | VOG3685, VOG4962, VOG5413, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917 |
| LCEGDDLG_9 | 72182 | 78599 | False | Siphoviridae | VOG9667, VOG4552, VOG0181, VOG0535, VOG0322, VOG6545, VOG0514, VOG4566 |
| LCEGDDLG_9 | 79713 | 105604 | False | Siphoviridae | VOG0044, VOG3643, VOG0198, VOG5757, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254 |
Phigaro v2.4.0 (Database: Jan. 2024 release)