Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IJGKOMPJ_1 | 2731876 | 2731172 | WalR | 2.07e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IJGKOMPJ_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IJGKOMPJ_1 | 357830 | 363241 | True | Unknown | VOG5088, VOG5088, VOG6163, VOG8637, VOG5088, VOG5088 |
| IJGKOMPJ_1 | 927305 | 937471 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| IJGKOMPJ_1 | 1407212 | 1411424 | True | Unknown | VOG0944, VOG5532, VOG0275, VOG6495, VOG5532 |
| IJGKOMPJ_1 | 1721394 | 1752140 | False | Siphoviridae | VOG4918, VOG0703, VOG7017, VOG0861, VOG6455, VOG4599, VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG6965, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG6947, VOG4549, VOG4570, VOG0143, VOG0198, VOG1563, VOG0044, VOG5088, VOG3643 |
| IJGKOMPJ_1 | 1817958 | 1849998 | False | Siphoviridae | VOG3594, VOG4649, VOG0602, VOG7017, VOG0861, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG1183, VOG1300, VOG4564, VOG0720, VOG10227, VOG3699, VOG4549, VOG4570, VOG6579, VOG0198, VOG0044, VOG0102, VOG3643, VOG2820, VOG0822, VOG0536, VOG9860 |
| IJGKOMPJ_1 | 2218048 | 2250391 | False | Siphoviridae | VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG0796, VOG4570, VOG6242, VOG0198, VOG0044, VOG3643, VOG0152, VOG0822, VOG0536, VOG9860, VOG0226 |
Phigaro v2.4.0 (Database: Jan. 2024 release)