Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNONLKBC_7 | 4701 | 4507 | CspA | 1.11e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNONLKBC_1 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_2 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_3 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_4 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_5 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_6 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_7 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_8 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_9 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_10 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_11 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_12 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_13 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_14 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_15 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_16 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_17 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_18 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_19 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_20 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_21 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_22 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_23 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_24 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_25 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_26 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_27 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_28 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_29 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_30 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_31 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_32 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_33 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_34 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_35 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_36 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_37 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_38 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_39 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_40 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_41 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_42 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_43 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_44 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_45 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_46 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_47 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_48 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_49 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_50 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_51 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_52 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_53 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_54 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_55 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_56 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_57 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_58 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_59 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_60 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_61 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_62 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_63 | 0.0 | 1.0 | 0.0 |
| JNONLKBC_65 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_66 | 1.0 | 0.0 | 1.0 |
| JNONLKBC_67 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNONLKBC_3 | 87844 | 96549 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0198, VOG0204 |
| JNONLKBC_8 | 2292 | 40131 | False | Siphoviridae | VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0686, VOG0198, VOG4693, VOG0189, VOG4855, VOG0186, VOG1309, VOG7298, VOG0181, VOG0513, VOG6495, VOG11003, VOG6495, VOG6495, VOG4602 |
| JNONLKBC_8 | 49165 | 55953 | False | Siphoviridae | VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
| JNONLKBC_31 | 2604 | 22862 | False | Siphoviridae | VOG10227, VOG0720, VOG4564, VOG0638, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG10972 |
| JNONLKBC_34 | 4536 | 20197 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312 |
Phigaro v2.4.0 (Database: Jan. 2024 release)