Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JKLCBNIB_44 | 189417 | 191342 | tet(Q) | ARO:3000191 | tet(Q) | 99.69 | 97.56 | Z21523.1 |
| JKLCBNIB_63 | 3141 | 5066 | tet(Q) | ARO:3000191 | tet(Q) | 97.50 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JKLCBNIB_44 | 189417 | 191342 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | Z21523 |
| JKLCBNIB_63 | 446 | 1663 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JKLCBNIB_44 | 189420 | 191342 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.69 | 100.00 | WP_002560998.1 |
| JKLCBNIB_63 | 446 | 1666 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| JKLCBNIB_63 | 3141 | 5063 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.97 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JKLCBNIB_2 | 1.0 | 0.0 | 1.0 |
| JKLCBNIB_3 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_4 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_5 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_6 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_7 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_8 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_9 | 1.0 | 0.0 | 1.0 |
| JKLCBNIB_10 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_11 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_12 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_13 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_14 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_15 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_16 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_17 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_18 | 1.0 | 0.0 | 1.0 |
| JKLCBNIB_19 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_20 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_21 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_22 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_23 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_24 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_25 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_26 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_27 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_28 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_29 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_30 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_31 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_32 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_33 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_34 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_35 | 1.0 | 0.0 | 1.0 |
| JKLCBNIB_36 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_37 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_38 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_39 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_40 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_41 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_42 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_43 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_44 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_45 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_46 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_47 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_48 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_49 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_50 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_51 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_52 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_53 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_54 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_55 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_56 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_57 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_58 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_59 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_60 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_61 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_62 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_63 | 0.0 | 1.0 | 0.0 |
| JKLCBNIB_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JKLCBNIB_57 | 348974 | 356608 | False | Unknown | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)