Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 9 | 0 | 0 | 9.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOCLKFJF_13 | 9351 | 10259 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
| JOCLKFJF_13 | 8812 | 9354 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| JOCLKFJF_13 | 6666 | 7460 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
| JOCLKFJF_6 | 2829 | 3563 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| JOCLKFJF_27 | 2654 | 3859 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| JOCLKFJF_67 | 31797 | 33071 | tet(Q) | ARO:3000191 | tet(Q) | 97.18 | 64.69 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JOCLKFJF_13 | 9351 | 10259 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| JOCLKFJF_13 | 6666 | 7460 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| JOCLKFJF_6 | 2829 | 3563 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| JOCLKFJF_6 | 595 | 2057 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.47 | 99.93 | AF274302 |
| JOCLKFJF_67 | 31797 | 33071 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.20 | 66.20 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOCLKFJF_66 | 3216 | 3989 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| JOCLKFJF_66 | 1422 | 2285 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| JOCLKFJF_13 | 9354 | 10259 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| JOCLKFJF_13 | 6669 | 7460 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| JOCLKFJF_27 | 2120 | 2629 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JOCLKFJF_13 | 8815 | 9354 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| JOCLKFJF_6 | 2829 | 3560 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| JOCLKFJF_27 | 2657 | 3859 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JOCLKFJF_6 | 822 | 2054 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | PARTIALX | 96.84 | 84.39 | WP_000420317.1 |
| JOCLKFJF_67 | 31797 | 33071 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 97.18 | 66.30 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOCLKFJF_1 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_2 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_3 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_4 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_5 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_6 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_7 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_8 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_9 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_10 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_11 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_12 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_13 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_14 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_15 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_16 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_17 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_18 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_19 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_20 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_21 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_22 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_23 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_24 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_25 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_27 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_28 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_29 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_30 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_31 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_32 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_33 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_34 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_35 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_36 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_37 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_38 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_39 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_40 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_41 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_42 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_43 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_44 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_45 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_46 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_47 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_48 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_49 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_50 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_51 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_52 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_53 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_54 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_55 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_56 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_57 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_58 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_59 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_60 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_61 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_62 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_63 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_64 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_65 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_66 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_67 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_68 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_69 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_70 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_71 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_73 | 1.0 | 0.0 | 1.0 |
| JOCLKFJF_74 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_75 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_76 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_77 | 0.0 | 1.0 | 0.0 |
| JOCLKFJF_78 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JOCLKFJF_32 | 16637 | 19128 | False | Siphoviridae | VOG0275, |
| JOCLKFJF_41 | 373019 | 380510 | False | Siphoviridae | VOG9606, |
Phigaro v2.4.0 (Database: Jan. 2024 release)