Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMMKOJOI_68 | 68932 | 70906 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| NMMKOJOI_79 | 8930 | 9838 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
| NMMKOJOI_79 | 8391 | 8933 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| NMMKOJOI_79 | 6245 | 7039 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NMMKOJOI_79 | 8930 | 9838 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| NMMKOJOI_79 | 6245 | 7039 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| NMMKOJOI_68 | 68980 | 70905 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| NMMKOJOI_68 | 79706 | 80923 | mef(A) | Erythromycin, Azithromycin | 95.16 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMMKOJOI_79 | 8933 | 9838 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| NMMKOJOI_79 | 6248 | 7039 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| NMMKOJOI_79 | 8394 | 8933 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| NMMKOJOI_68 | 68980 | 70902 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| NMMKOJOI_68 | 79706 | 80920 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 99.26 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NMMKOJOI_1 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_2 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_3 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_4 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_5 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_6 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_7 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_8 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_9 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_10 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_11 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_12 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_13 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_14 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_15 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_16 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_17 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_18 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_19 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_20 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_21 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_22 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_23 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_24 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_25 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_26 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_27 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_28 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_29 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_30 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_31 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_32 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_33 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_34 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_35 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_36 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_37 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_38 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_39 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_40 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_41 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_42 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_43 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_44 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_45 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_46 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_47 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_48 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_49 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_50 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_51 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_52 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_53 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_55 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_56 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_57 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_58 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_59 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_60 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_61 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_62 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_63 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_64 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_65 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_66 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_67 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_68 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_69 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_70 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_71 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_72 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_73 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_74 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_75 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_76 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_77 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_78 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_79 | 1.0 | 0.0 | 1.0 |
| NMMKOJOI_80 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_81 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_82 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_83 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_84 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_85 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_86 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_87 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_88 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_89 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_90 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_91 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_92 | 0.0 | 1.0 | 0.0 |
| NMMKOJOI_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NMMKOJOI_32 | 105734 | 113142 | False | Unknown | VOG0226, |
Phigaro v2.4.0 (Database: Jan. 2024 release)