Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLJNHHLB_125 | 1096 | 1887 | aadA | ARO:3002601 | aadA | 100.00 | 127.76 | AF550679.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLJNHHLB_125 | 1099 | 1887 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | EXACTX | 100.00 | 100.00 | WP_001206316.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HLJNHHLB_41 | 76103 | 75399 | WalR | 9.28e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HLJNHHLB_47 | 88951 | 88757 | CspR | 6.33e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HLJNHHLB_47 | 88951 | 88754 | CspA | 9.71e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HLJNHHLB_55 | 21086 | 21988 | rep38 | 903 / 903 | 99.56 | CP005943 |
| HLJNHHLB_133 | 927 | 1880 | repUS64 | 954 / 954 | 97.59 | JN601038 |
| HLJNHHLB_57 | 4348 | 5283 | rep28 | 936 / 936 | 95.19 | CP005948 |
| HLJNHHLB_125 | 548 | 678 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HLJNHHLB_15 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_16 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_17 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_18 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_20 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_21 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_24 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_25 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_26 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_27 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_28 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_29 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_30 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_31 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_32 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_33 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_34 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_35 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_36 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_37 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_38 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_39 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_40 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_41 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_43 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_44 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_45 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_46 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_47 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_48 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_49 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_50 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_51 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_53 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_54 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_55 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_56 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_57 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_58 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_59 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_60 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_61 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_62 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_63 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_64 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_65 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_66 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_67 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_68 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_69 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_70 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_72 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_73 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_74 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_75 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_77 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_78 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_79 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_80 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_81 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_82 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_83 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_84 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_85 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_86 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_87 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_88 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_89 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_90 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_91 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_92 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_93 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_95 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_96 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_97 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_98 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_99 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_100 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_101 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_102 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_103 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_104 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_105 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_106 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_107 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_108 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_109 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_110 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_111 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_112 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_113 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_114 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_115 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_117 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_118 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_119 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_120 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_121 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_122 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_123 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_125 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_127 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_128 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_129 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_130 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_131 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_133 | 1.0 | 0.0 | 1.0 |
| HLJNHHLB_134 | 0.0 | 1.0 | 0.0 |
| HLJNHHLB_135 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HLJNHHLB_43 | 16486 | 44495 | False | Siphoviridae | VOG8870, VOG10972, VOG4599, VOG4605, VOG6163, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044, VOG4693, VOG0189, VOG8647, VOG0514 |
| HLJNHHLB_120 | 95468 | 146665 | False | Siphoviridae | VOG0249, VOG0054, VOG1637, VOG8294, VOG7896, VOG3390, VOG4660, VOG3463, VOG3462, VOG0801, VOG4545, VOG1323, VOG0725, VOG0799, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG6468, VOG0198, VOG0044, VOG4010, VOG11003, VOG5039, VOG4693, VOG0189, VOG5046, VOG0186, VOG1309, VOG7298, VOG0181, VOG9655, VOG6495, VOG11003, VOG1638, VOG8615, VOG6139, VOG3556, VOG6495, VOG4602, VOG6317, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG1886, VOG4581 |
Phigaro v2.4.0 (Database: Jan. 2024 release)