Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBMDOCCE_33 | 1 | 606 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | PARTIAL_CONTIG_ENDX | 100.00 | 76.81 | WP_001206316.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NBMDOCCE_122 | 4825 | 5529 | WalR | 7.85e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NBMDOCCE_85 | 14634 | 14440 | CspR | 5.22e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NBMDOCCE_85 | 14634 | 14437 | CspA | 8.01e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NBMDOCCE_137 | 10352 | 11281 | rep28 | 930 / 930 | 98.60 | CP003162 |
| NBMDOCCE_33 | 1027 | 1157 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NBMDOCCE_25 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_26 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_27 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_28 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_29 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_30 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_31 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_33 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_35 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_36 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_37 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_38 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_39 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_40 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_41 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_42 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_43 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_44 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_45 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_46 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_48 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_49 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_50 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_51 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_53 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_55 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_56 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_57 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_58 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_59 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_60 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_61 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_62 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_63 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_64 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_65 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_66 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_68 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_69 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_70 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_71 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_72 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_74 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_75 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_77 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_78 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_79 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_80 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_81 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_82 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_83 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_84 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_85 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_86 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_87 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_88 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_89 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_91 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_93 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_94 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_95 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_96 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_97 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_98 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_99 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_100 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_101 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_102 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_103 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_104 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_105 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_107 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_108 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_109 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_110 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_111 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_112 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_113 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_114 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_115 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_116 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_117 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_118 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_119 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_120 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_121 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_122 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_123 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_125 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_127 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_129 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_130 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_131 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_133 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_134 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_135 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_136 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_137 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_139 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_140 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_141 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_142 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_144 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_145 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_146 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_147 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_149 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_150 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_151 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_152 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_155 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_156 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_158 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_159 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_160 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_161 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_162 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_163 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_164 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_165 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_166 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_167 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_168 | 0.0 | 1.0 | 0.0 |
| NBMDOCCE_169 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_170 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_171 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_172 | 1.0 | 0.0 | 1.0 |
| NBMDOCCE_173 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NBMDOCCE_98 | 8386 | 37459 | False | Siphoviridae | VOG0685, VOG0322, VOG0514, VOG4566, VOG0189, VOG6005, VOG0822, VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
Phigaro v2.4.0 (Database: Jan. 2024 release)