Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EEKCHEED_21 | 40 | 831 | aadA | ARO:3002601 | aadA | 100.00 | 127.76 | AF550679.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EEKCHEED_21 | 43 | 831 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | EXACTX | 100.00 | 100.00 | WP_001206316.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EEKCHEED_81 | 5213 | 5917 | WalR | 7.87e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EEKCHEED_73 | 14634 | 14440 | CspR | 5.22e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EEKCHEED_73 | 14634 | 14437 | CspA | 8.01e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EEKCHEED_125 | 3587 | 4516 | rep28 | 930 / 930 | 98.60 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EEKCHEED_14 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_15 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_16 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_18 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_20 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_21 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_23 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_24 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_25 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_26 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_27 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_28 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_29 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_30 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_31 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_33 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_34 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_36 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_37 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_38 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_39 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_41 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_42 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_43 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_44 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_45 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_46 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_47 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_48 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_50 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_51 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_53 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_55 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_56 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_57 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_58 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_59 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_60 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_61 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_62 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_63 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_64 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_65 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_66 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_67 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_68 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_69 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_70 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_71 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_73 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_75 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_78 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_79 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_80 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_81 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_82 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_83 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_84 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_86 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_87 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_88 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_89 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_90 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_91 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_92 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_94 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_95 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_96 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_97 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_98 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_99 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_100 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_101 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_102 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_103 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_104 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_105 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_106 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_107 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_108 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_109 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_110 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_111 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_112 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_113 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_114 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_115 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_116 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_117 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_118 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_119 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_120 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_121 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_122 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_123 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_124 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_125 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_126 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_127 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_129 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_130 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_131 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_132 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_133 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_134 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_135 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_136 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_137 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_138 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_139 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_140 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_141 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_142 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_143 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_144 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_145 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_146 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_147 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_148 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_149 | 0.0 | 1.0 | 0.0 |
| EEKCHEED_150 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_151 | 1.0 | 0.0 | 1.0 |
| EEKCHEED_152 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EEKCHEED_64 | 8386 | 37459 | False | Siphoviridae | VOG0685, VOG0322, VOG0514, VOG4566, VOG0189, VOG6005, VOG0822, VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
| EEKCHEED_68 | 144075 | 154370 | False | Siphoviridae | VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)