Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DMGDAKEF_21 | 521 | 1531 | aadA | ARO:3002601 | aadA | 99.62 | 127.76 | AF550679.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DMGDAKEF_21 | 740 | 1528 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | BLASTX | 99.62 | 100.00 | WP_001206316.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DMGDAKEF_65 | 5213 | 5917 | WalR | 7.87e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DMGDAKEF_48 | 14634 | 14440 | CspR | 5.22e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DMGDAKEF_48 | 14634 | 14437 | CspA | 8.01e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DMGDAKEF_103 | 2179 | 3108 | rep28 | 930 / 930 | 98.60 | CP003162 |
| DMGDAKEF_21 | 1949 | 2079 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DMGDAKEF_10 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_11 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_12 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_14 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_15 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_16 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_17 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_18 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_19 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_20 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_21 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_22 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_23 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_24 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_25 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_26 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_27 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_28 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_29 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_30 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_31 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_32 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_33 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_34 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_35 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_36 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_37 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_39 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_40 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_41 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_42 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_44 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_45 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_46 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_47 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_48 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_50 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_51 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_52 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_53 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_54 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_55 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_56 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_57 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_59 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_60 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_61 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_62 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_63 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_65 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_66 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_69 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_70 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_71 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_72 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_73 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_74 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_75 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_76 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_77 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_78 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_79 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_81 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_83 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_85 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_86 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_87 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_88 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_89 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_90 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_91 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_92 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_93 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_94 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_95 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_96 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_97 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_98 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_99 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_100 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_101 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_102 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_103 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_104 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_105 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_106 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_107 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_109 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_110 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_111 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_112 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_113 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_114 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_115 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_116 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_117 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_118 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_122 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_123 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_124 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_126 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_127 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_128 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_129 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_130 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_131 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_132 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_133 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_134 | 1.0 | 0.0 | 1.0 |
| DMGDAKEF_135 | 0.0 | 1.0 | 0.0 |
| DMGDAKEF_136 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DMGDAKEF_59 | 144075 | 154370 | False | Siphoviridae | VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632 |
| DMGDAKEF_61 | 8386 | 37459 | False | Siphoviridae | VOG0685, VOG0322, VOG0514, VOG4566, VOG0189, VOG6005, VOG0822, VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
Phigaro v2.4.0 (Database: Jan. 2024 release)