Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JFFBKPEK_12 | 781248 | 780544 | WalR | 6.83e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JFFBKPEK_14 | 63082 | 63276 | CspR | 8.85e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JFFBKPEK_14 | 63082 | 63279 | CspA | 1.36e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JFFBKPEK_1 | 13847 | 14907 | repUS73 | 1061 / 1101 | 97.36 | CP002654 |
| JFFBKPEK_5 | 1 | 957 | repUS64 | 958 / 954 | 92.28 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JFFBKPEK_1 | 1.0 | 0.0 | 1.0 |
| JFFBKPEK_2 | 0.0 | 1.0 | 0.0 |
| JFFBKPEK_3 | 0.0 | 1.0 | 0.0 |
| JFFBKPEK_4 | 1.0 | 0.0 | 1.0 |
| JFFBKPEK_5 | 1.0 | 0.0 | 1.0 |
| JFFBKPEK_6 | 1.0 | 0.0 | 1.0 |
| JFFBKPEK_7 | 1.0 | 0.0 | 1.0 |
| JFFBKPEK_8 | 1.0 | 0.0 | 1.0 |
| JFFBKPEK_9 | 0.0 | 1.0 | 0.0 |
| JFFBKPEK_10 | 1.0 | 0.0 | 1.0 |
| JFFBKPEK_11 | 1.0 | 0.0 | 1.0 |
| JFFBKPEK_12 | 0.0 | 1.0 | 0.0 |
| JFFBKPEK_13 | 0.0 | 1.0 | 0.0 |
| JFFBKPEK_14 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JFFBKPEK_2 | 526102 | 538063 | False | Siphoviridae | VOG4632, VOG4609, VOG4609, VOG0205, VOG4841, VOG5088, VOG4581, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG4553, VOG0204, VOG0198 |
| JFFBKPEK_2 | 556786 | 578606 | False | Siphoviridae | VOG4187, VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0539, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG4868, VOG10251 |
| JFFBKPEK_2 | 1429681 | 1464339 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG4187, VOG0198, VOG3643, VOG4693, VOG11024, VOG0189, VOG4636, VOG0514, VOG6545, VOG0322, VOG0535 |
| JFFBKPEK_12 | 283856 | 315901 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG7168, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4673, VOG4577, VOG6541, VOG3643, VOG3137, VOG1298, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG6450 |
Phigaro v2.4.0 (Database: Jan. 2024 release)