Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PILGHHJN_6 | 216691 | 218616 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| PILGHHJN_12 | 23549 | 24439 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| PILGHHJN_16 | 793 | 1530 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PILGHHJN_16 | 793 | 1530 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
| PILGHHJN_6 | 216691 | 218616 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PILGHHJN_16 | 793 | 1527 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
| PILGHHJN_6 | 216694 | 218616 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| PILGHHJN_12 | 23552 | 24439 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PILGHHJN_1 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_2 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_3 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_4 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_5 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_6 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_7 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_8 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_9 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_10 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_11 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_12 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_13 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_14 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_15 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_16 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_17 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_18 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_19 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_20 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_21 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_22 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_23 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_24 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_25 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_26 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_27 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_28 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_29 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_30 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_31 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_32 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_33 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_34 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_35 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_36 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_37 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_38 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_39 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_40 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_41 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_42 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_43 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_44 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_45 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_46 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_47 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_48 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_49 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_50 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_51 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_53 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_54 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_55 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_56 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_57 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_58 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_59 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_60 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_61 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_62 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_63 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_64 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_65 | 0.0 | 1.0 | 0.0 |
| PILGHHJN_66 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_67 | 1.0 | 0.0 | 1.0 |
| PILGHHJN_68 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PILGHHJN_3 | 54077 | 67720 | False | Siphoviridae | VOG3992, |
| PILGHHJN_8 | 99230 | 110900 | False | Unknown | VOG1093, |
| PILGHHJN_21 | 53845 | 61965 | False | Unknown | VOG0298, |
Phigaro v2.4.0 (Database: Jan. 2024 release)