Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KKGDFOHC_45 | 11000 | 12925 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| KKGDFOHC_45 | 381 | 1517 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KKGDFOHC_45 | 11000 | 12925 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KKGDFOHC_45 | 351 | 1517 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| KKGDFOHC_8 | 231499 | 232716 | mef(A) | Erythromycin, Azithromycin | 95.24 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KKGDFOHC_45 | 351 | 1514 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| KKGDFOHC_45 | 11003 | 12925 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KKGDFOHC_8 | 231499 | 232713 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 99.01 | 99.26 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KKGDFOHC_24 | 74346 | 75926 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KKGDFOHC_1 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_2 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_3 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_4 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_5 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_6 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_7 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_8 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_9 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_10 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_11 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_12 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_13 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_14 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_15 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_16 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_17 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_18 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_19 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_20 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_21 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_22 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_23 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_24 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_25 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_26 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_27 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_28 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_29 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_30 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_31 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_32 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_33 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_34 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_35 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_36 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_37 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_38 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_39 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_40 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_41 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_42 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_43 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_44 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_45 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_46 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_47 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_48 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_49 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_50 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_51 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_52 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_53 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_54 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_55 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_56 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_57 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_58 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_59 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_60 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_62 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_63 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_65 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_66 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_67 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_68 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_70 | 1.0 | 0.0 | 1.0 |
| KKGDFOHC_71 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_72 | 0.0 | 1.0 | 0.0 |
| KKGDFOHC_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KKGDFOHC_1 | 159886 | 172271 | False | Unknown | VOG7888, |
| KKGDFOHC_2 | 109563 | 113634 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)