Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LKELBHDK_205062749923WalR9.78e-115transcriptional regulatory protein84.25100.00EPH95667
LKELBHDK_75677156965CspR8.83e-30cold shock protein84.6198.48AAO82613
LKELBHDK_75677156968CspA1.35e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
LKELBHDK_141981151repUS64954 / 95497.90JN601038
LKELBHDK_511047311408rep28936 / 93696.69CP005948
LKELBHDK_322209023022repUS73950 / 110182.42CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LKELBHDK_11.00.01.0
LKELBHDK_20.01.00.0
LKELBHDK_30.01.00.0
LKELBHDK_41.00.01.0
LKELBHDK_51.00.01.0
LKELBHDK_60.01.00.0
LKELBHDK_70.01.00.0
LKELBHDK_80.01.00.0
LKELBHDK_90.01.00.0
LKELBHDK_110.01.00.0
LKELBHDK_121.00.01.0
LKELBHDK_130.01.00.0
LKELBHDK_141.00.01.0
LKELBHDK_150.01.00.0
LKELBHDK_170.01.00.0
LKELBHDK_180.01.00.0
LKELBHDK_191.00.01.0
LKELBHDK_200.01.00.0
LKELBHDK_210.01.00.0
LKELBHDK_221.00.01.0
LKELBHDK_230.01.00.0
LKELBHDK_280.01.00.0
LKELBHDK_291.00.01.0
LKELBHDK_300.01.00.0
LKELBHDK_321.00.01.0
LKELBHDK_330.01.00.0
LKELBHDK_350.01.00.0
LKELBHDK_370.01.00.0
LKELBHDK_381.00.01.0
LKELBHDK_390.01.00.0
LKELBHDK_411.00.01.0
LKELBHDK_421.00.01.0
LKELBHDK_431.00.01.0
LKELBHDK_441.00.01.0
LKELBHDK_450.01.00.0
LKELBHDK_461.00.01.0
LKELBHDK_470.01.00.0
LKELBHDK_481.00.01.0
LKELBHDK_491.00.01.0
LKELBHDK_500.01.00.0
LKELBHDK_511.00.01.0
LKELBHDK_521.00.01.0
LKELBHDK_530.01.00.0
LKELBHDK_541.00.01.0
LKELBHDK_551.00.01.0
LKELBHDK_571.00.01.0
LKELBHDK_581.00.01.0
LKELBHDK_590.01.00.0
LKELBHDK_601.00.01.0
LKELBHDK_611.00.01.0
LKELBHDK_621.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LKELBHDK_93098537852FalseSiphoviridaeVOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327
LKELBHDK_94349363202FalseSiphoviridaeVOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG7168, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888
LKELBHDK_13152610157164FalseSiphoviridaeVOG4544, VOG4581, VOG4841, VOG0205
LKELBHDK_205126259814FalseSiphoviridaeVOG6827, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements