Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
JGNOMEMK_205062749923WalR9.79e-115transcriptional regulatory protein84.25100.00EPH95667
JGNOMEMK_75677156965CspR8.83e-30cold shock protein84.6198.48AAO82613
JGNOMEMK_75677156968CspA1.35e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
JGNOMEMK_485821535repUS64954 / 95497.90JN601038
JGNOMEMK_231047311408rep28936 / 93696.69CP005948
JGNOMEMK_304394144873repUS73950 / 110182.42CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
JGNOMEMK_20.01.00.0
JGNOMEMK_40.01.00.0
JGNOMEMK_51.00.01.0
JGNOMEMK_61.00.01.0
JGNOMEMK_70.01.00.0
JGNOMEMK_80.01.00.0
JGNOMEMK_90.01.00.0
JGNOMEMK_100.01.00.0
JGNOMEMK_110.01.00.0
JGNOMEMK_121.00.01.0
JGNOMEMK_130.01.00.0
JGNOMEMK_150.01.00.0
JGNOMEMK_161.00.01.0
JGNOMEMK_170.01.00.0
JGNOMEMK_180.01.00.0
JGNOMEMK_191.00.01.0
JGNOMEMK_200.01.00.0
JGNOMEMK_210.01.00.0
JGNOMEMK_220.01.00.0
JGNOMEMK_231.00.01.0
JGNOMEMK_240.01.00.0
JGNOMEMK_251.00.01.0
JGNOMEMK_260.01.00.0
JGNOMEMK_270.01.00.0
JGNOMEMK_280.01.00.0
JGNOMEMK_301.00.01.0
JGNOMEMK_320.01.00.0
JGNOMEMK_340.01.00.0
JGNOMEMK_361.00.01.0
JGNOMEMK_371.00.01.0
JGNOMEMK_381.00.01.0
JGNOMEMK_391.00.01.0
JGNOMEMK_401.00.01.0
JGNOMEMK_411.00.01.0
JGNOMEMK_420.01.00.0
JGNOMEMK_430.01.00.0
JGNOMEMK_441.00.01.0
JGNOMEMK_450.01.00.0
JGNOMEMK_461.00.01.0
JGNOMEMK_471.00.01.0
JGNOMEMK_481.00.01.0
JGNOMEMK_491.00.01.0
JGNOMEMK_510.01.00.0
JGNOMEMK_521.00.01.0
JGNOMEMK_531.00.01.0
JGNOMEMK_540.01.00.0
JGNOMEMK_551.00.01.0
JGNOMEMK_561.00.01.0
JGNOMEMK_581.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
JGNOMEMK_93098537852FalseSiphoviridaeVOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327
JGNOMEMK_94349363202FalseSiphoviridaeVOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG7168, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888
JGNOMEMK_13152610157164FalseSiphoviridaeVOG4544, VOG4581, VOG4841, VOG0205
JGNOMEMK_205126259814FalseSiphoviridaeVOG6827, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements