Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
KMNEOOEJ_167610375399WalR9.28e-115transcriptional regulatory protein84.25100.00EPH95667
KMNEOOEJ_125449554689CspR6.33e-30cold shock protein84.6198.48AAO82613
KMNEOOEJ_125449554692CspA9.70e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
KMNEOOEJ_542240823310rep38903 / 90399.56CP005943
KMNEOOEJ_1169271880repUS64954 / 95497.59JN601038
KMNEOOEJ_7443485283rep28936 / 93695.19CP005948

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
KMNEOOEJ_30.01.00.0
KMNEOOEJ_110.01.00.0
KMNEOOEJ_120.01.00.0
KMNEOOEJ_130.01.00.0
KMNEOOEJ_140.01.00.0
KMNEOOEJ_150.01.00.0
KMNEOOEJ_160.01.00.0
KMNEOOEJ_171.00.01.0
KMNEOOEJ_180.01.00.0
KMNEOOEJ_191.00.01.0
KMNEOOEJ_200.01.00.0
KMNEOOEJ_210.01.00.0
KMNEOOEJ_220.01.00.0
KMNEOOEJ_230.01.00.0
KMNEOOEJ_240.01.00.0
KMNEOOEJ_250.01.00.0
KMNEOOEJ_260.01.00.0
KMNEOOEJ_270.01.00.0
KMNEOOEJ_280.01.00.0
KMNEOOEJ_290.01.00.0
KMNEOOEJ_300.01.00.0
KMNEOOEJ_320.01.00.0
KMNEOOEJ_330.01.00.0
KMNEOOEJ_340.01.00.0
KMNEOOEJ_350.01.00.0
KMNEOOEJ_360.01.00.0
KMNEOOEJ_370.01.00.0
KMNEOOEJ_380.01.00.0
KMNEOOEJ_390.01.00.0
KMNEOOEJ_400.01.00.0
KMNEOOEJ_410.01.00.0
KMNEOOEJ_420.01.00.0
KMNEOOEJ_430.01.00.0
KMNEOOEJ_440.01.00.0
KMNEOOEJ_451.00.01.0
KMNEOOEJ_460.01.00.0
KMNEOOEJ_470.01.00.0
KMNEOOEJ_481.00.01.0
KMNEOOEJ_490.01.00.0
KMNEOOEJ_501.00.01.0
KMNEOOEJ_510.01.00.0
KMNEOOEJ_520.01.00.0
KMNEOOEJ_530.01.00.0
KMNEOOEJ_541.00.01.0
KMNEOOEJ_550.01.00.0
KMNEOOEJ_561.00.01.0
KMNEOOEJ_571.00.01.0
KMNEOOEJ_581.00.01.0
KMNEOOEJ_591.00.01.0
KMNEOOEJ_601.00.01.0
KMNEOOEJ_611.00.01.0
KMNEOOEJ_620.01.00.0
KMNEOOEJ_630.01.00.0
KMNEOOEJ_641.00.01.0
KMNEOOEJ_651.00.01.0
KMNEOOEJ_660.01.00.0
KMNEOOEJ_681.00.01.0
KMNEOOEJ_691.00.01.0
KMNEOOEJ_701.00.01.0
KMNEOOEJ_710.01.00.0
KMNEOOEJ_721.00.01.0
KMNEOOEJ_731.00.01.0
KMNEOOEJ_741.00.01.0
KMNEOOEJ_750.01.00.0
KMNEOOEJ_760.01.00.0
KMNEOOEJ_771.00.01.0
KMNEOOEJ_781.00.01.0
KMNEOOEJ_791.00.01.0
KMNEOOEJ_801.00.01.0
KMNEOOEJ_810.01.00.0
KMNEOOEJ_820.01.00.0
KMNEOOEJ_841.00.01.0
KMNEOOEJ_890.01.00.0
KMNEOOEJ_911.00.01.0
KMNEOOEJ_930.01.00.0
KMNEOOEJ_941.00.01.0
KMNEOOEJ_991.00.01.0
KMNEOOEJ_1001.00.01.0
KMNEOOEJ_1011.00.01.0
KMNEOOEJ_1021.00.01.0
KMNEOOEJ_1041.00.01.0
KMNEOOEJ_1061.00.01.0
KMNEOOEJ_1111.00.01.0
KMNEOOEJ_1141.00.01.0
KMNEOOEJ_1161.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
KMNEOOEJ_31648644495FalseSiphoviridaeVOG8870, VOG10972, VOG4599, VOG4605, VOG6163, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044, VOG4693, VOG0189, VOG8647, VOG0514
KMNEOOEJ_1395828147025FalseSiphoviridaeVOG0249, VOG0054, VOG1637, VOG8294, VOG7896, VOG3390, VOG4660, VOG3463, VOG3462, VOG0801, VOG4545, VOG1323, VOG0725, VOG0799, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG6468, VOG0198, VOG0044, VOG4010, VOG11003, VOG5039, VOG4693, VOG0189, VOG5046, VOG0186, VOG1309, VOG7298, VOG0181, VOG9655, VOG6495, VOG11003, VOG1638, VOG8615, VOG6139, VOG3556, VOG6495, VOG4602, VOG6317, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG1886, VOG4581

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements