Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KFLOOKGP_4 | 3095262 | 3097187 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| KFLOOKGP_4 | 2660137 | 2661102 | CfxA3 | ARO:3003003 | CfxA3 | 99.38 | 100.00 | AF472622.2 |
| KFLOOKGP_4 | 599059 | 599949 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KFLOOKGP_4 | 3095262 | 3097187 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KFLOOKGP_4 | 2660137 | 2661102 | cfxA3 | Ampicillin | 98.65 | 100.00 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KFLOOKGP_4 | 599062 | 599949 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| KFLOOKGP_4 | 3095265 | 3097187 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KFLOOKGP_4 | 2660140 | 2661102 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 99.38 | 100.00 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KFLOOKGP_1 | 1514 | 2094 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KFLOOKGP_1 | 1.0 | 0.0 | 1.0 |
| KFLOOKGP_2 | 1.0 | 0.0 | 1.0 |
| KFLOOKGP_3 | 1.0 | 0.0 | 1.0 |
| KFLOOKGP_4 | 0.0 | 1.0 | 0.0 |
| KFLOOKGP_5 | 0.0 | 1.0 | 0.0 |
| KFLOOKGP_6 | 1.0 | 0.0 | 1.0 |
| KFLOOKGP_7 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KFLOOKGP_4 | 1244366 | 1255504 | False | Siphoviridae | VOG4751, |
| KFLOOKGP_4 | 3636331 | 3648561 | False | Siphoviridae | VOG4690, |
| KFLOOKGP_4 | 4818164 | 4825778 | False | Myoviridae | VOG3801, |
Phigaro v2.4.0 (Database: Jan. 2024 release)